Information on SUBCLASS 3.4.13 |
Subclass Accession number: 5499
Subclass: 3.4.13 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 5.6 +/- 8.1 Average RMSD (Å) : 0.767 +/- 0.252 Consensus geometry
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Consensus Sequence: | pXXXXhp |
(φψ)-conformation: | aabaapb |
Pattern: | [AL] | x | [DER] | [AIL] | [AEG] | [EQS] | x | [AFI] | x | [QRS] | x | [NSV] | [EKP] | x | [FGV] | [KRT] | [IKV] | x |
Conservation: | 1.064 | -1.057 | 1.104 | 0.383 | -0.157 | 1.464 | -1.057 | -0.337 | -1.418 | 0.744 | 1.089 | -0.697 | 0.924 | -1.418 | -1.418 | 0.924 | -0.157 | 0.020 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1j8m_F_228 | 1j8m | F | 228 | 245 | AYDLASKFNQASKIGTII | HHHHHHHHHHT-TTEEEE | aaaaaaaaaaabaaxbbb |
1nwc_A_291 | 1nwc | A | 291 | 308 | LEEIEQIIASHNEWVKVI | HHHHHHHHHHS-SSEEEE | aaaaaaaaaaabaaxbxx |
1v8f_A_215 | 1v8f | A | 218 | 235 | ALRAGEEALRAVPEFRKD | HHHHHHHHHTT-TT-EEE | aaaaaaaaaaabaaxbxa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1v8f_A_215 | 1v8f | A | GOLGLYCEROL | V - 215 |
1v8f_A_215 | 1v8f | A | GOLGLYCEROL | A - 216 |
1v8f_A_215 | 1v8f | A | GOLGLYCEROL | E - 217 |
Clusters included in this Subclass |
CLUSTER: HE.3.130 |
CLUSTER: HE.5.253 |