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PDB code:

Information on SUBCLASS 3.5.4

Subclass Accession number: 5504 Subclass: 3.5.4 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 15 Average sequence ID (%) : 9.4 +/- 14.4 Average RMSD (Å) : 0.660 +/- 0.203 Consensus geometry d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1atg_*_12	1atg	-	20	31	GQFAKQTGHAVV	HHHHHHH---EE	aaaaaaavxbbb
1byf_A_36	1byf	A	43	54	LAFTEVKGHDYW	HHHHHHHT--EE	aaaaaaavbxbx
1h5q_A_122	1h5q	A	132	143	AKLWLQKQQKGS	HHHHHHHT--EE	aaaaaaavbxbb
1jrl_A_115	1jrl	A	126	137	PKLAKEFDVPLL	HHHHHHTT--EE	aaaaaaalbxbx
1m1n_A_163	1m1n	A	168	179	KVKGAELSKTIV	HHHHHHHT--EE	aaaaaaalbxbb
1mh3_A_232	1mh3	A	232	243	WSNIDTSKVNYG	HHHHHHHT--EE	aaaaaaavpxbb
1o9j_A_247	1o9j	A	255	266	EAAAKSNLKRVT	HHHHHHT--EEE	aaaaaaalxxbb
1oas_A_71	1oas	A	77	88	AYVAAARGYKLT	HHHHHHHT--EE	aaaaaaavbxbb
1ols_A_258	1ols	A	269	280	RRRAVAENQPFL	HHHHHHHT--EE	aaaaaaalbxbb
1ozh_A_224	1ozh	A	228	239	RRLLETSHIPVT	HHHHHHH---EE	aaaaaaalxpbb
1p1j_A_303	1p1j	A	306	317	VQLAEHEGTFIA	HHHHHHHT--EE	aaaaaaavbxbb
1pzx_A_65	1pzx	A	72	83	FLPYAKENRPCL	HHHHHHTT--EE	aaaaaaalxwbb
1rif_A_68	1rif	A	69	80	KKFCDNFGYKAW	HHHHHHTT--EE	aaaaaaalxbbb
1set_A_288	1set	A	303	314	EEILRLLELPYR	HHHHHHTT--EE	aaaaaaalbwbb
3mbp_*_232	3mbp	-	232	243	WSNIDTSKVNYG	HHHHHHTT--EE	aaaaaaaUxxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1atg_*_12	1atg	*	EDO1,2-ETHANEDIOL	Q - 17
1atg_*_12	1atg	*	EDO1,2-ETHANEDIOL	S - 33
1atg_*_12	1atg	*	EDO1,2-ETHANEDIOL	S - 34
1atg_*_12	1atg	*	WO4TUNGSTATE(VI)ION	G - 35
1atg_*_12	1atg	*	EDO1,2-ETHANEDIOL	G - 35
1byf_A_36	1byf	A	ZNZINC ION	S - 36
1byf_A_36	1byf	A	ZNOZINC ION, 2 WATERS COORDINATED	S - 36
1byf_A_36	1byf	A	ZNZINC ION	T - 37
1byf_A_36	1byf	A	ZNOZINC ION, 2 WATERS COORDINATED	T - 37
1byf_A_36	1byf	A	ZNZINC ION	M - 38
1byf_A_36	1byf	A	ZNOZINC ION, 2 WATERS COORDINATED	M - 38
1byf_A_36	1byf	A	ZNZINC ION	K - 49
1byf_A_36	1byf	A	ZNOZINC ION, 2 WATERS COORDINATED	K - 49
1byf_A_36	1byf	A	ZNZINC ION	D - 52
1byf_A_36	1byf	A	ACTACETATE ION	D - 52
1h5q_A_122	1h5q	A	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	T - 147
1o9j_A_247	1o9j	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	T - 247
1o9j_A_247	1o9j	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 249
1o9j_A_247	1o9j	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 250
1o9j_A_247	1o9j	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	M - 252
1o9j_A_247	1o9j	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 253
1o9j_A_247	1o9j	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	L - 267
1o9j_A_247	1o9j	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	E - 268
1oas_A_71	1oas	A	PLPPYRIDOXAL-5'-PHOSPHATE	N - 71
1oas_A_71	1oas	A	PLPPYRIDOXAL-5'-PHOSPHATE	T - 72
1ozh_A_224	1ozh	A	PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL	S - 224
1ozh_A_224	1ozh	A	PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL	L - 227
1ozh_A_224	1ozh	A	PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL	R - 228
1ozh_A_224	1ozh	A	PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL	R - 229
1ozh_A_224	1ozh	A	PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL	L - 231
1ozh_A_224	1ozh	A	PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL	E - 232
1ozh_A_224	1ozh	A	PIG2-[2-(2-HYDROXY-ETHOXY)-ETHOXY]-ETHANOL	H - 235
1rif_A_68	1rif	A	AUGOLD ION	I - 68
1rif_A_68	1rif	A	AUGOLD ION	K - 69
1rif_A_68	1rif	A	AUGOLD ION	K - 70
1rif_A_68	1rif	A	AUGOLD ION	F - 71
1rif_A_68	1rif	A	AUGOLD ION	C - 72
1rif_A_68	1rif	A	AUGOLD ION	D - 73
1rif_A_68	1rif	A	AUGOLD ION	Y - 77
1rif_A_68	1rif	A	AUGOLD ION	K - 78
1rif_A_68	1rif	A	AUGOLD ION	A - 79
1rif_A_68	1rif	A	AUGOLD ION	I - 81

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1o9j_A_247	1o9j	A	NDANAD BINDING SITE FOR CHAIN A	I - 253
1o9j_A_247	1o9j	A	NDANAD BINDING SITE FOR CHAIN A	E - 268

Clusters included in this Subclass

CLUSTER: HE.3.51

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