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Information on SUBCLASS 3.6.1
Subclass Accession number: 5510
Subclass: 3.6.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 44

Average sequence ID (%) : 14.8 +/- 16.6
Average RMSD (Å) : 0.707 +/- 0.181

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XppXphX
(φψ)-conformation: aapaabb
Pattern: [afiklmtv]x[adegknqrt]x[afiklmtv]x[aegknqrst][dehknqrst][dekpqs][cdehknqrsty][acfilmvy]xx
Conservation:0.306-0.796-0.183-0.9721.786-0.6870.126-0.2372.007-0.4170.851-0.750-1.035
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a2o_A_131a2o   A1931MTEIINSHSDMEMHHHHHHTSTTEEEaaaaaaabaabbx
1b7g_O_111b7g   O1628VADAIIKQPDMKLHHHHHHT-TTEEEaaaaaaaxaabbx
1bjn_A_2611bjn   A276287LYGVIDNSDFYR.HHHHHHH-SSEE.aaaaaaabaabb.
1bo4_A_641bo4   A6678YLGNLLRSKTFIAHHHHHHHSSSEEEaaaaaaaxaabbb
1c7n_A_1531c7n   A155167KLEKLSKDKNNKAHHHHHHT-TTEEEaaaaaaaxaaxab
1cf2_O_111cf2   O1628VADAIAQQDDMKVHHHHHHTSSSEEEaaaaaaaxaabbx
1cjc_A_611cjc   A6476TFTQTARSDRCAFHHHHHHTSTTEEEaaaaaaaxaabbb
1cl1_A_2591cl1   A273285VAEWLAEHPQVARHHHHHHT-TTEEEaaaaaaaxaabab
1cs1_A_2481cs1   A262274IVKYLQTQPLVKKHHHHHTT-TTEEEaaaaaaaxaaxab
1d2f_A_1511d2f   A153165KLEAVLAKPECKIHHHHHHTSTTEEEaaaaaaapaaxab
1dmu_A_911dmu   A94106LTRLVSQREDITVHHHHHHTSTT-EEaaaaaaaxaabbb
1dxy_*_2791dxy   -280292LWDELLGMPNVVLHHHHHHT-TTEEEaaaaaaaxaabbx
1dz3_A_121dz3   A1830LDEYISSQPDMEVHHHHHHTSTTEEEaaaaaaaxaabbx
1e5e_A_2601e5e   A274286VAEYLKSHPAVEKHHHHHHT-TTEEEaaaaaaaxaabab
1elu_A_2981elu   A312324LWRGLNQLPHVHCHHHHHHHSTTEEEaaaaaaaxaabbx
1f5a_A_1321f5a   A133145FYDKLKLQEEVKDHHHHHHT-TTEEEaaaaaaabaaxbv
1f5a_A_3981f5a   A401413LVGSLEKNEFITLHHHHHHTSTTEEEaaaaaaabaabab
1fg7_A_2671fg7   A279291LIAALKEIPCVEQHHHHHHHSTTEEEaaaaaaaxaaxab
1fl2_A_3941fl2   A396408LQDKLRSLKNVDIHHHHHHT-TTEEEaaaaaaaxaabbb
1gc0_A_2621gc0   A276288LAEFLARQPQVELHHHHHHT-TTEEEaaaaaaaxaaxab
1hyu_A_3941hyu   A396408LQDKVRSLKNVDIHHHHHTT-TTEEEaaaaaaaxaabbb
1i52_A_371i52   A4153SVHALLAHPRVKRHHHHHHTSTTEEEaaaaaaaxaaxab
1ibj_A_3871ibj   A390402SKHLVETTKYFSIHHHHHHH-SSSEEaaaaaaapaabxx
1iq0_A_2481iq0   A252263ALALLEQSPHVF.HHHHHTTSTTEE.aaaaaaaxaabb.
1j4a_A_2811j4a   A282294RLADLIARPNVLVHHHHHHH-TTEEEaaaaaaaxaabbb
1jvw_A_361jvw   A5163FMEQKAAQPDAVKHHHHHHHSTTEEEaaaaaaapaaxbb
1jwy_B_1551jwy   B161173MVMAYIKKQNAIIHHHHHHHSTTEEEaaaaaaapaabbb
1k1x_A_2331k1x   A237249FFDAITSNEKINLHHHHHHH-TTEEEaaaaaaapaabbx
1k6j_A_421k6j   A4355IAEELQAIPNVTLHHHHHHT-TTEEEaaaaaaaxaaxbx
1kdg_A_4101kdg   A410422YLQTALARPNFTFHHHHHHT-TTEEEaaaaaaaxaabbb
1lou_A_721lou   A7587LARELRIRDNVRRHHHHHHTSTTEEEaaaaaaaxaaxab
1lqt_A_641lqt   A6678QFEKTAEDPRFRFHHHHHHTSTTEEEaaaaaaaxaabbb
1m1h_A_1471m1h   A149161LLMAIEKTPHVFRHHHHHHTSTTEEEaaaaaaaxaabbM
1m6y_A_2461m6y   A252264VKETFRNSKKLRIHHHHHHH-SSEEEaaaaaaaxaabbx
1mky_A_1931mky   A196208LFNAILNKERALVHHHHHHTSTTEEEaaaaaaaxaabbx
1nst_A_6171nst   A620632LYLFLGMHPDLSSHHHHHHTSTTEEEaaaaaaaxaabbx
1odo_A_461odo   A4859LLKQLLTSSDVS.HHHHHTT-TTEE.aaaaaaaxaabb.
1q8b_A_341q8b   A3850LEEETNKEEGCITHHHHHTTSTTEEEaaaaaaaxaaxab
1qht_A_921qht   A96108IRDRIRAHPAVVDHHHHHHTSTTEEEaaaaaaaxaabab
1scj_B_3531scj   B355367AVKELKKDPSVAYHHHHHHTSTTEEEaaaaaaaxaabab
1spb_P_531spb   P5567AVKELKKDPSVAYHHHHHHH-TTEEEaaaaaaaxaabab
1tgo_A_921tgo   A96108IRDKIKEHPAVVDHHHHHHHSTTEEEaaaaaaaxaaxae
1ufa_A_3641ufa   A371383VLRLLAQNPKVRPHHHHHHT-SS-EEaaaaaaaxaabbx
2irf_G_742irf   G8193FRCAMNSLPDIEEHHHHHHH-TTEEEaaaaaaaxaabbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c7n_A_1531c7n   A     PLPPYRIDOXAL-5'-PHOSPHATE C - 171
1cf2_O_111cf2   O     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE T - 11
1cf2_O_111cf2   O     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 12
1cf2_O_111cf2   O     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 13
1cf2_O_111cf2   O     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE S - 32
1cf2_O_111cf2   O     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE K - 33
1cl1_A_2591cl1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) R - 262
1cs1_A_2481cs1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) R - 251
1d2f_A_1511d2f   A     PLPPYRIDOXAL-5'-PHOSPHATE C - 169
1dmu_A_911dmu   A     CACALCIUM ION V - 98
1dmu_A_911dmu   A     CACALCIUM ION S - 99
1dmu_A_911dmu   A     CACALCIUM ION Q - 100
1dmu_A_911dmu   A     CACALCIUM ION R - 101
1dmu_A_911dmu   A     CACALCIUM ION E - 102
1dmu_A_911dmu   A     CACALCIUM ION D - 103
1dmu_A_911dmu   A     CACALCIUM ION I - 104
1dmu_A_911dmu   A     CACALCIUM ION T - 105
1f5a_A_3981f5a   A     MSESELENOMETHIONINE T - 412
1f5a_A_3981f5a   A     MSESELENOMETHIONINE L - 413
1fg7_A_2671fg7   A     MSESELENOMETHIONINE E - 267
1fg7_A_2671fg7   A     MSESELENOMETHIONINE R - 268
1fg7_A_2671fg7   A     MSESELENOMETHIONINE V - 269
1fg7_A_2671fg7   A     MSESELENOMETHIONINE A - 270
1gc0_A_2621gc0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) R - 265
1i52_A_371i52   A     CACALCIUM ION L - 45
1i52_A_371i52   A     CACALCIUM ION L - 46
1i52_A_371i52   A     CACALCIUM ION A - 47
1i52_A_371i52   A     CACALCIUM ION H - 48
1i52_A_371i52   A     CACALCIUM ION P - 49
1i52_A_371i52   A     CACALCIUM ION V - 51
1i52_A_371i52   A     CTPCYTIDINE-5'-TRIPHOSPHATE A - 57
1kdg_A_4101kdg   A     MANALPHA-D-MANNOSE T - 421
1lqt_A_641lqt   A     ACTACETATE ION F - 67
1lqt_A_641lqt   A     ACTACETATE ION E - 68
1lqt_A_641lqt   A     ACTACETATE ION A - 71
1lqt_A_641lqt   A     ACTACETATE ION F - 76
1lqt_A_641lqt   A     ACTACETATE ION R - 77
1lqt_A_641lqt   A     ACTACETATE ION F - 78
1mky_A_1931mky   A     GDPGUANOSINE-5'-DIPHOSPHATE K - 193
1mky_A_1931mky   A     GDPGUANOSINE-5'-DIPHOSPHATE S - 194
1mky_A_1931mky   A     GDPGUANOSINE-5'-DIPHOSPHATE T - 195
1mky_A_1931mky   A     MSESELENOMETHIONINE L - 196
1mky_A_1931mky   A     GDPGUANOSINE-5'-DIPHOSPHATE L - 196
1mky_A_1931mky   A     MSESELENOMETHIONINE F - 197
1mky_A_1931mky   A     MSESELENOMETHIONINE A - 199
1mky_A_1931mky   A     MSESELENOMETHIONINE I - 200
1mky_A_1931mky   A     PO4PHOSPHATE ION N - 202
1mky_A_1931mky   A     PO4PHOSPHATE ION K - 203
1mky_A_1931mky   A     PO4PHOSPHATE ION E - 204
1mky_A_1931mky   A     PO4PHOSPHATE ION R - 205
1nst_A_6171nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE T - 617
1nst_A_6171nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE T - 618
1nst_A_6171nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE A - 619
1nst_A_6171nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE F - 623
1odo_A_461odo   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 53
1q8b_A_341q8b   A     MSESELENOMETHIONINE E - 34
1q8b_A_341q8b   A     MSESELENOMETHIONINE F - 35
1q8b_A_341q8b   A     MSESELENOMETHIONINE K - 36
1q8b_A_341q8b   A     MSESELENOMETHIONINE K - 37
1q8b_A_341q8b   A     MSESELENOMETHIONINE I - 49
1q8b_A_341q8b   A     MSESELENOMETHIONINE H - 52
1ufa_A_3641ufa   A     MSESELENOMETHIONINE P - 379
1ufa_A_3641ufa   A     MSESELENOMETHIONINE K - 380
1ufa_A_3641ufa   A     MSESELENOMETHIONINE V - 381
1ufa_A_3641ufa   A     MSESELENOMETHIONINE R - 382
2irf_G_742irf   G     IDOIODO GROUP N - 80
2irf_G_742irf   G     IDOIODO GROUP C - 83
2irf_G_742irf   G     IDOIODO GROUP A - 84
2irf_G_742irf   G     IDOIODO GROUP M - 85
2irf_G_742irf   G     IDOIODO GROUP S - 87

Clusters included in this Subclass
CLUSTER: HE.2.61
CLUSTER: HE.3.224
CLUSTER: HE.3.45
CLUSTER: HE.3.48
CLUSTER: HE.4.107
CLUSTER: HE.4.20
CLUSTER: HE.4.331
CLUSTER: HE.5.260
CLUSTER: HE.5.45
CLUSTER: HE.6.118