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Information on SUBCLASS 3.6.2
Subclass Accession number: 5511
Subclass: 3.6.2 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 28

Average sequence ID (%) : 14.2 +/- 16.6
Average RMSD (Å) : 0.825 +/- 0.273

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXpXphX
(φψ)-conformation: aapaabb
Pattern: [dehkqrtwy]xx[afgiklmtv][adegknqst][adkqrst][aenqrst][DEPQST][deknqrsw][CFILMV]x[fhlmvy]
Conservation:-0.202-0.417-1.272-0.365-0.420-0.0210.0601.967-0.5592.044-0.693-0.121
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a04_A_161a04   A2334KQLISMAPDITVHHHHTT-TTEEEaaaaaabaabbx
1a2o_A_131a2o   A2031TEIINSHSDMEMHHHHHTSTTEEEaaaaaabaabbx
1a8l_*_381a8l   -4657QELSELTDKLSYHHHHTT-TTEEEaaaaaabaabbb
1aqu_A_1721aqu   A179190WWEKSKNSRVLFHHHHTTSTTEEEaaaaaaxaabxb
1b7g_O_111b7g   O1728ADAIIKQPDMKLHHHHHT-TTEEEaaaaaaxaabbx
1c3p_A_1731c3p   A176187QEAFYDTDQVFVHHHHTT-SSEEEaaaaaabaabbb
1cf2_O_111cf2   O1728ADAIAQQDDMKVHHHHHTSSSEEEaaaaaaxaabbx
1din_*_1761din   -183194TEGFGANPLLQVHHHHTT-TTEEEaaaaaabaaxbb
1dmu_A_911dmu   A95106TRLVSQREDITVHHHHHTSTT-EEaaaaaaxaabbb
1dz3_A_121dz3   A1930DEYISSQPDMEVHHHHHTSTTEEEaaaaaaxaabbx
1g3m_A_1711g3m   A178189WWEKGKSPRVLFHHHHTTSTTEEEaaaaaaxaabxx
1gc0_A_3211gc0   A326337RRFMNALQLFSRHHHHHH-SSSEEaaaaaapaaxxx
1gca_*_151gca   -2536EKDGKSAPDVQLHHHHHTSTTEEEaaaaaabaabbx
1gud_A_1461gud   A156167TEAFKKASQIKLHHHHHT-TTEEEaaaaaabaaxbx
1hyu_A_311hyu   A4152AEIAELSDKVTFHHHHTT-TTEEEaaaaaabaabbb
1i8t_A_3161i8t   A326337RELASREDKVIFHHHHHH-TTEEEaaaaaaxaabbx
1jwq_A_261jwq   A3849ESILKQNPKLEVHHHHHT-TTEEEaaaaaaxaabbx
1kam_A_531kam   A6172KLAIQSNPSFKLHHHHTT-TTEEEaaaaaabaaxbb
1l8a_A_6451l8a   A646657HIQSLTIPNCISHHHHTTSTTEEEaaaaaaxaabbb
1lk9_A_3141lk9   A330341TALLDQSDRFSYHHHHTT-SSEEEaaaaaabaabbb
1mb4_A_2881mb4   A293304EMIATHNDWVKVHHHHTS-SSEEEaaaaaabaaxbx
1mqi_A_1241mqi   A124135AEDLSKQTEIAYHHHHHT-SSSEEaaaaaabaaxxb
1nst_A_6171nst   A621632YLFLGMHPDLSSHHHHHTSTTEEEaaaaaaxaabbx
1nwc_A_2911nwc   A296307QIIASHNEWVKVHHHHHS-SSEEEaaaaaabaaxbx
1q8b_A_341q8b   A3950EEETNKEEGCITHHHHTTSTTEEEaaaaaaxaaxab
1s2d_A_191s2d   A2940KELLAKNPSIAHHHHHTT-TTEEEaaaaaaxaabab
2dap_*_132dap   -1930EKLIAKQPDMDLHHHHTT-TTEEEaaaaaaxaabbx
2gbp_*_152gbp   -2536EQDAKAAPDVQLHHHHTT-TTEEEaaaaaabaabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cf2_O_111cf2   O     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE T - 11
1cf2_O_111cf2   O     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 12
1cf2_O_111cf2   O     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 13
1cf2_O_111cf2   O     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE S - 32
1cf2_O_111cf2   O     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE K - 33
1dmu_A_911dmu   A     CACALCIUM ION V - 98
1dmu_A_911dmu   A     CACALCIUM ION S - 99
1dmu_A_911dmu   A     CACALCIUM ION Q - 100
1dmu_A_911dmu   A     CACALCIUM ION R - 101
1dmu_A_911dmu   A     CACALCIUM ION E - 102
1dmu_A_911dmu   A     CACALCIUM ION D - 103
1dmu_A_911dmu   A     CACALCIUM ION I - 104
1dmu_A_911dmu   A     CACALCIUM ION T - 105
1g3m_A_1711g3m   A     EDO1,2-ETHANEDIOL K - 173
1g3m_A_1711g3m   A     EDO1,2-ETHANEDIOL K - 176
1g3m_A_1711g3m   A     EDO1,2-ETHANEDIOL S - 177
1g3m_A_1711g3m   A     EDO1,2-ETHANEDIOL W - 178
1g3m_A_1711g3m   A     EDO1,2-ETHANEDIOL E - 180
1gca_*_151gca   *     GALD-GALACTOSE N - 15
1gca_*_151gca   *     CACALCIUM ION N - 15
1gca_*_151gca   *     GALD-GALACTOSE F - 16
1gca_*_151gca   *     CACALCIUM ION F - 16
1gca_*_151gca   *     GALD-GALACTOSE M - 17
1gca_*_151gca   *     CACALCIUM ION M - 17
1gca_*_151gca   *     GALD-GALACTOSE S - 18
1gca_*_151gca   *     CACALCIUM ION S - 18
1gud_A_1461gud   A     ZNZINC ION E - 157
1gud_A_1461gud   A     ZNZINC ION K - 160
1jwq_A_261jwq   A     ZNZINC ION E - 26
1jwq_A_261jwq   A     ZNZINC ION N - 30
1lk9_A_3141lk9   A     NAGN-ACETYL-D-GLUCOSAMINE K - 321
1lk9_A_3141lk9   A     NAGN-ACETYL-D-GLUCOSAMINE E - 324
1lk9_A_3141lk9   A     NAGN-ACETYL-D-GLUCOSAMINE R - 325
1lk9_A_3141lk9   A     NAGN-ACETYL-D-GLUCOSAMINE N - 328
1nst_A_6171nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE T - 617
1nst_A_6171nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE T - 618
1nst_A_6171nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE A - 619
1nst_A_6171nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE F - 623
1q8b_A_341q8b   A     MSESELENOMETHIONINE E - 34
1q8b_A_341q8b   A     MSESELENOMETHIONINE F - 35
1q8b_A_341q8b   A     MSESELENOMETHIONINE K - 36
1q8b_A_341q8b   A     MSESELENOMETHIONINE K - 37
1q8b_A_341q8b   A     MSESELENOMETHIONINE I - 49
1q8b_A_341q8b   A     MSESELENOMETHIONINE H - 52
2gbp_*_152gbp   *     GLCGLUCOSE N - 15
2gbp_*_152gbp   *     GLCGLUCOSE F - 16
2gbp_*_152gbp   *     GLCGLUCOSE M - 17
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gud_A_1461gud   A ZN2ZN BINDING SITE FOR CHAIN AE - 157

Clusters included in this Subclass
CLUSTER: HE.4.38
CLUSTER: HE.5.16
CLUSTER: HE.6.60