ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.8.1

Subclass Accession number: 5524
Subclass: 3.8.1

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 29

Average sequence ID (%) : 16.6 +/- 17.2
Average RMSD (Å) : 0.621 +/- 0.238

Consensus geometry

d (Å): 9

delta (°): 0-45

theta (°): 45-90

rho (°): 270-315

Consensus Sequence:	XhpGpXh
(φψ)-conformation:	aapgpbb

Pattern:	x	[adeknqrst]	[cdeknqrstwy]	[AFILMVW]	[dehknqrst]	[dgnrs]	[hknqry]	x	[fhilvy]	x
Conservation:	-0.674	-0.442	-0.877	0.836	-0.612	2.078	-0.049	-0.890	0.629	-1.000

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a2z_A_19	1a2z	A	24	32	AKYFDRKQI.	HHHHTT-EE.	aaaapvxbb.
1d2n_A_696	1d2n	A	703	712	AQQVKGKKVW	HHHHTTSEEE	aaaapgxxbb
1ee8_A_3	1ee8	A	14	23	RPLVLGQTLR	HHHHTT-EEE	aaaapvxxxa
1ex2_A_86	1ex2	A	93	102	LRRLSGRSHS	HHHHTTSEEE	aaaaplbbbb
1fr2_B_36	1fr2	B	39	47	ADKLRDKEF.	HHHHTT-EE.	aaaapvxxb.
1fxl_A_90	1fxl	A	97	105	INTLNGLRL.	HHHHTT-EE.	aaaaxvxxb.
1g24_A_152	1g24	A	159	168	KAKFLNKDRL	HHHHTT-EEE	aaaapvbxbb
1giq_A_316	1giq	A	323	332	KEKWEGKVIT	HHHHTT-EEE	aaaaxvxbbb
1i7n_A_127	1i7n	A	128	136	AKCFRGKKI.	HHHHTT-EE.	aaaapvxbb.
1iof_A_18	1iof	A	23	31	AKDLDGIKI.	HHHHTT-EE.	aaaaxvxbb.
1j54_A_79	1j54	A	87	96	MDYIRGAELV	HHHHTTSEEE	aaaapvxxxb
1l4u_A_86	1l4u	A	89	98	RAALAGHTVV	HHHHTTS-EE	aaaapgxxbx
1lst_*_106	1lst	-	106	115	LESLKGKHVG	HHHHTT-EEE	aaaapvxbbx
1m1n_B_342	1m1n	B	359	368	HTWLHGKRFA	HHHHTT-EEE	aaaapvxbbb
1nni_1_91	1nni	1	91	100	SEQFKYKPVA	HHHHTT-EEE	aaaapvxwbb
1nnj_A_37	1nnj	A	41	50	KKELTGKTIQ	HHHHTT-BEE	aaaaxvxbxa
1nu4_A_62	1nu4	A	69	77	LRSMQGFPF.	HHHHTT-EE.	aaaapvxwx.
1oal_A_114	1oal	A	114	123	LKELKGHAIM	HHHHTT-EEE	aaaapvxbbb
1ojq_A_116	1ojq	A	123	132	NNLMNSRIYR	HHHHTT-EEE	aaaaxvbxbb
1oo0_B_124	1oo0	B	131	139	KEALNGAEI.	HHHHTT-EE.	aaaaxvxbb.
1orr_A_256	1orr	A	256	265	VSKIRGNAFN	HHHHTT-EEE	aaaapvbbbx
1qgu_B_338	1qgu	B	355	364	HTWLHGKKFG	HHHHTT-EEE	aaaaxvxbbx
1qhd_A_28	1qhd	A	38	47	IITMNGNEFQ	HHHHTT-EEE	aaaapvxbbb
1qo0_A_244	1qo0	A	244	253	SDVAEGQVVV	HHHHTT-EEE	aaaapvxbbb
1qs1_A_167	1qs1	A	174	182	KEQFLDRDI.	HHHHTTSEE.	aaaaxvbbb.
1qup_A_182	1qup	A	182	191	TWQLIGRSFV	HHHHTTSEEE	aaaapvxbbb
1ui0_A_135	1ui0	A	135	144	ITKVRGKWYE	HHHHTT--EE	aaaaxvbxbb
1uw4_A_105	1uw4	A	111	120	RDRFDGYVFL	HHHHTT-EEE	aaaaxvpxxb
2scu_B_66	2scu	B	73	81	AENWLGKRL.	HHHHTTSEE.	aaaapvxbb.

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1d2n_A_696	1d2n	A	GOLGLYCEROL	D - 696
1d2n_A_696	1d2n	A	GOLGLYCEROL	K - 697
1d2n_A_696	1d2n	A	GOLGLYCEROL	E - 698
1d2n_A_696	1d2n	A	GOLGLYCEROL	T - 700
1ex2_A_86	1ex2	A	PO4PHOSPHATE ION	Q - 110
1giq_A_316	1giq	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	T - 332
1giq_A_316	1giq	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	Y - 333
1j54_A_79	1j54	A	EGLETHYLENE GLYCOL	G - 92
1j54_A_79	1j54	A	EGLETHYLENE GLYCOL	A - 93
1j54_A_79	1j54	A	MNMANGANESE (II) ION	I - 97
1l4u_A_86	1l4u	A	ADPADENOSINE-5'-DIPHOSPHATE	L - 100
1m1n_B_342	1m1n	B	CACALCIUM ION	D - 353
1m1n_B_342	1m1n	B	CACALCIUM ION	M - 354
1m1n_B_342	1m1n	B	CACALCIUM ION	T - 356
1m1n_B_342	1m1n	B	CACALCIUM ION	D - 357
1nni_1_91	1nni	1	MSESELENOMETHIONINE	F - 94
1nni_1_91	1nni	1	MSESELENOMETHIONINE	V - 99
1nni_1_91	1nni	1	MSESELENOMETHIONINE	L - 101
1nni_1_91	1nni	1	MSESELENOMETHIONINE	L - 102
1nni_1_91	1nni	1	MSESELENOMETHIONINE	A - 103
1nni_1_91	1nni	1	MSESELENOMETHIONINE	V - 104
1nni_1_91	1nni	1	FMNFLAVIN MONONUCLEOTIDE	V - 104
1nu4_A_62	1nu4	A	MLAMALONIC ACID	V - 62
1nu4_A_62	1nu4	A	MLAMALONIC ACID	S - 63
1nu4_A_62	1nu4	A	MLAMALONIC ACID	S - 64
1nu4_A_62	1nu4	A	MLAMALONIC ACID	T - 66
1nu4_A_62	1nu4	A	MLAMALONIC ACID	N - 67
1nu4_A_62	1nu4	A	MGMAGNESIUM ION	L - 69
1nu4_A_62	1nu4	A	MLAMALONIC ACID	L - 69
1nu4_A_62	1nu4	A	MGMAGNESIUM ION	R - 70
1nu4_A_62	1nu4	A	MLAMALONIC ACID	R - 70
1nu4_A_62	1nu4	A	MGMAGNESIUM ION	S - 71
1nu4_A_62	1nu4	A	MGMAGNESIUM ION	M - 72
1nu4_A_62	1nu4	A	MGMAGNESIUM ION	Q - 73
1oal_A_114	1oal	A	CUCOPPER (II) ION	M - 123
1oal_A_114	1oal	A	CUCOPPER (II) ION	I - 124
1oal_A_114	1oal	A	CUCOPPER (II) ION	H - 125
1oo0_B_124	1oo0	B	GOLGLYCEROL	N - 135
1qgu_B_338	1qgu	B	MO2MAGNESIUM ION, 2 WATERS COORDINATED	D - 349
1qgu_B_338	1qgu	B	MO2MAGNESIUM ION, 2 WATERS COORDINATED	M - 350
1qgu_B_338	1qgu	B	MO2MAGNESIUM ION, 2 WATERS COORDINATED	D - 353
1qgu_B_338	1qgu	B	EDO1,2-ETHANEDIOL	T - 356
1qgu_B_338	1qgu	B	EDO1,2-ETHANEDIOL	W - 357
1qgu_B_338	1qgu	B	EDO1,2-ETHANEDIOL	K - 361
1qhd_A_28	1qhd	A	CACALCIUM ION	Q - 47
2scu_B_66	2scu	B	COACOENZYME A	K - 66

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1oal_A_114	1oal	A	AC2CU BINDING SITE FOR CHAIN A	H - 125

Clusters included in this Subclass