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PDB code:

Information on SUBCLASS 3.9.1

Subclass Accession number: 5527 Subclass: 3.9.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 27 Average sequence ID (%) : 13.6 +/- 15.9 Average RMSD (Å) : 0.689 +/- 0.278 Consensus geometry d (Å): 11 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1avq_A_152	1avq	A	159	171	QYSMWVTRKNAWY	HHHHHHHT-SEEE	aaaaaaavxabbx
1ax4_A_76	1ax4	A	83	95	DKAKELFNYDYII	HHHHHHH---EEE	aaaaaaavxabbb
1b1c_A_9	1b1c	A	10	22	VEKMKKTGRNIIV	HHHHHHTT--EEE	aaaaaaavxabbb
1bs0_A_84	1bs0	A	91	103	EELAEWLGYSRAL	HHHHHHHT-SEEE	aaaaaaavbabbb
1c7g_A_75	1c7g	A	82	94	KTVKELFGFKHIV	HHHHHHH--SEEE	aaaaaaavxabbb
1cs1_A_52	1cs1	A	59	71	RALAELEGGAGAV	HHHHHHHT-SEEE	aaaaaaavxabbb
1dfo_A_69	1dfo	A	80	92	DRAKELFGADYAN	HHHHHHHT-SEEE	aaaaaaavbabbb
1e5e_A_62	1e5e	A	69	81	GKIAFLEKTEACV	HHHHHHHT-SEEE	aaaaaaalbabbb
1f1e_A_102	1f1e	A	124	135	AEYADEDGRKTV.	HHHHHHTT-SEE.	aaaaaaalbabx.
1g61_A_2169	1g61	A	2173	2185	EFLKSLFKVEYIG	HHHHHHHT-SEEE	aaaaaaalbabbb
1gc0_A_65	1gc0	A	72	84	ARMASLEGGEAGL	HHHHHHHT-SEEE	aaaaaaavbabbb
1hp1_A_384	1hp1	A	391	403	AAQMDRTGADFAV	HHHHHHHT-SEEE	aaaaaaavxabbb
1i0a_A_213	1i0a	A	214	225	ELLRSELDMTSI.	HHHHHHHT-SEE.	aaaaaaavbabb.
1ibj_A_133	1ibj	A	140	152	SLLAKLDKADRAF	HHHHHHHT-SEEE	aaaaaaalbabbb
1iug_A_30	1iug	A	41	53	GLLREAFRTEGEV	HHHHHHHT-SSEE	aaaaaaavbaxbb
1j5v_A_218	1j5v	A	226	238	EEVTRKYNFKTVG	HHHHHHH--SEEE	aaaaaaalxabbb
1k7w_A_215	1k7w	A	216	227	EMLRSELEFASI.	HHHHHHHT-SEE.	aaaaaaalxabb.
1kl1_A_65	1kl1	A	76	88	ERAKQLFGAEHAN	HHHHHHH--SEEE	aaaaaaavxabbb
1mdo_A_39	1mdo	A	46	58	AAFCRLTGNQYAV	HHHHHHH--SEEE	aaaaaaavxabbb
1nmo_A_179	1nmo	A	179	191	IDSAARFGVDAFI	HHHHHHH--SEEE	aaaaaaaSbabbb
1nth_A_271	1nth	A	283	295	INAVLMSSASWHL	HHHHHHS--SEEE	aaaaaaalxabbb
1o69_A_32	1o69	A	39	51	QSVKDYSKSENAL	HHHHHHH--SEEE	aaaaaaavxabbb
1s7j_A_207	1s7j	A	212	224	PYWGKRLNQTTLS	HHHHHHHT-SEEE	aaaaaaavbabbb
1uuf_A_211	1uuf	A	211	223	REAAKALGADEVV	HHHHHHHT-SEEE	aaaaaaagxabbb
1vic_A_106	1vic	A	113	125	ADNLAKFNVNMAS	HHHHHHHT-SEEE	aaaaaaalbabbb
2dkb_*_111	2dkb	-	120	132	RMAKLVTGKYEIV	HHHHHHHS--EEE	aaaaaaavbaxbb
2oat_A_120	2oat	A	125	137	EYITKLFNYHKVL	HHHHHHHT-SEEE	aaaaaaavbabbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1avq_A_152	1avq	A	PO4PHOSPHATE ION	Q - 157
1avq_A_152	1avq	A	PO4PHOSPHATE ION	S - 161
1b1c_A_9	1b1c	A	FMNFLAVIN MONONUCLEOTIDE	G - 25
1e5e_A_62	1e5e	A	GOLGLYCEROL	V - 64
1e5e_A_62	1e5e	A	GOLGLYCEROL	E - 68
1e5e_A_62	1e5e	A	GOLGLYCEROL	V - 81
1e5e_A_62	1e5e	A	GOLGLYCEROL	A - 82
1e5e_A_62	1e5e	A	GOLGLYCEROL	T - 83
1f1e_A_102	1f1e	A	MSESELENOMETHIONINE	D - 103
1f1e_A_102	1f1e	A	MSESELENOMETHIONINE	A - 104
1f1e_A_102	1f1e	A	MSESELENOMETHIONINE	Y - 108
1f1e_A_102	1f1e	A	MSESELENOMETHIONINE	L - 111
1f1e_A_102	1f1e	A	MSESELENOMETHIONINE	I - 112
1f1e_A_102	1f1e	A	MSESELENOMETHIONINE	C - 113
1f1e_A_102	1f1e	A	MSESELENOMETHIONINE	A - 115
1f1e_A_102	1f1e	A	MSESELENOMETHIONINE	T - 116
1f1e_A_102	1f1e	A	MSESELENOMETHIONINE	E - 118
1f1e_A_102	1f1e	A	MSESELENOMETHIONINE	L - 119
1hp1_A_384	1hp1	A	ATPADENOSINE-5'-TRIPHOSPHATE	S - 405
1j5v_A_218	1j5v	A	MSESELENOMETHIONINE	R - 218
1j5v_A_218	1j5v	A	MSESELENOMETHIONINE	Y - 221
1j5v_A_218	1j5v	A	MSESELENOMETHIONINE	A - 222
1j5v_A_218	1j5v	A	MSESELENOMETHIONINE	A - 225
1j5v_A_218	1j5v	A	MSESELENOMETHIONINE	Y - 232
1j5v_A_218	1j5v	A	MSESELENOMETHIONINE	F - 234
1j5v_A_218	1j5v	A	MSESELENOMETHIONINE	V - 237
1j5v_A_218	1j5v	A	MSESELENOMETHIONINE	G - 238
1j5v_A_218	1j5v	A	MSESELENOMETHIONINE	I - 239
1nmo_A_179	1nmo	A	MSESELENOMETHIONINE	D - 180
1nth_A_271	1nth	A	BGX4-METHYL-PYRROLINE-5-CARBOXYLIC ACID	L - 295
2dkb_*_111	2dkb	*	PLPPYRIDOXAL-5'-PHOSPHATE	G - 111
2dkb_*_111	2dkb	*	PLPPYRIDOXAL-5'-PHOSPHATE	A - 112
2dkb_*_111	2dkb	*	PLPPYRIDOXAL-5'-PHOSPHATE	E - 113
2dkb_*_111	2dkb	*	PLPPYRIDOXAL-5'-PHOSPHATE	S - 114
2dkb_*_111	2dkb	*	PLPPYRIDOXAL-5'-PHOSPHATE	N - 115

Clusters included in this Subclass

CLUSTER: HE.3.23

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