ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.11.5

Subclass Accession number: 5538
Subclass: 3.11.5

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1.1 (>50 %)  1.1.1 (>50 %)
GO : GO:0016614 (>50 %)  GO:0016616 (>50 %)
SCOP : 51734 (>75 %)  51735 (>75 %)  51751 (>75 %)

Number of loops: 3

Average sequence ID (%) : 12.5 +/- 11.8
Average RMSD (Å) : 0.567 +/- 0.208

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	pXGXXhh
(φψ)-conformation:	aaeaabb

Pattern:	[AGL]	[AER]	[AET]	x	[AE]	[AKT]	[DEK]	[HIL]	[G]	[DGP]	[AN]	[ACV]	[CIL]	[AFG]	[AI]	[APV]
Conservation:	-0.884	-0.373	-0.373	-0.884	0.206	-0.373	0.479	-0.543	3.376	-0.287	0.433	0.053	0.224	-0.713	0.116	-0.458

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bdb_*_39	1bdb	-	42	57	LAELETDHGDNVLGIV	HHHHHHHHGGGEEEEE	aaaaaaaaeaabbbbx
1e6w_A_47	1e6w	A	47	62	GETEAKKLGGNCIFAP	HHHHHHHH-TTEEEEE	aaaaaaaaeaabbbbp
1k2w_A_39	1k2w	A	42	57	ARATAAEIGPAACAIA	HHHHHHHH-TTEEEEE	aaaaaaaaeaabbxbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bdb_*_39	1bdb	*	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	R - 41

Clusters included in this Subclass

CLUSTER: HE.3.149