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Information on SUBCLASS 3.24.1
Subclass Accession number: 5567
Subclass: 3.24.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 15.5 +/- 16.0
Average RMSD (Å) : 0.782 +/- 0.189

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XhGppXh
(φψ)-conformation: aaeappb
Pattern: [aflmt][adenqr]xx[agknqrs][EKRS]x[AFILVY][GNQ][DEGNQRST][aers][ekpq][afv]x
Conservation:-0.456-0.604-1.069-0.312-0.3951.019-0.9360.2152.8200.188-0.0040.0520.429-0.947
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b6a_*_3971b6a   -403416LNVINENFGTLAFCHHHHHHHTTTS-EEaaaaaaaaeaxxbb
1cjb_A_471cjb   A5871AYDIKKVYNNEEFHHHHHHHHHTT--EEaaaaaaaaeaxxbb
1e87_A_1261e87   A129142MNFLKRYAGREEHWHHHHHHHH-SS-EEaaaaaaaaeaxxbx
1gg4_A_2241gg4   A224236WLNWQSVIGSRKV.HHHHHHHHTTSEE.aaaaaaaaeaxxb.
1gh2_A_131gh2   A1326FQPELSGAGSRLAVHHHHHHHTTTS-EEaaaaaaaaeaxxbb
1gq6_A_2061gq6   A218231ADLIREKVGQRPVYHHHHHHHHTTSEEEaaaaaaaaeaxpbb
1hdr_*_591hdr   -6780TAEVGKLLGEEKVDHHHHHHHHTT--EEaaaaaaaaeaxxba
1mna_A_1221mna   A130143ARAILRAAGDAPVVHHHHHHHHTTS-EEaaaaaaaaeaxxbb
1mtz_A_791mtz   A87100EALRSKLFGNEKVFHHHHHHHHTT--EEaaaaaaaaeaxxbb
1ooe_A_531ooe   A6174LEQTASSLQGSQVDHHHHHHHHTT--EEaaaaaaaaeaxbba
1xgs_A_2171xgs   A223236LAKIKREYGTLPFAHHHHHHHTTTS-EEaaaaaaaaeaxpbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b6a_*_3971b6a   *     TNP3,5,6,8-TETRAMETHYL-N-METHYL PHENANTHROLINIUM A - 414
1cjb_A_471cjb   A     MGMAGNESIUM ION L - 75
1cjb_A_471cjb   A     IRP(1S)-1(9-DEAZAHYPOXANTHIN-9YL)1,4-DIDEOXY-1,4-IMINO-D-RIBITOL-5-PHOSPHATE L - 75
1cjb_A_471cjb   A     POPPYROPHOSPHATE 2- L - 75
1cjb_A_471cjb   A     MGMAGNESIUM ION L - 76
1cjb_A_471cjb   A     IRP(1S)-1(9-DEAZAHYPOXANTHIN-9YL)1,4-DIDEOXY-1,4-IMINO-D-RIBITOL-5-PHOSPHATE L - 76
1cjb_A_471cjb   A     POPPYROPHOSPHATE 2- L - 76
1gg4_A_2241gg4   A     MSESELENOMETHIONINE W - 224
1gg4_A_2241gg4   A     MSESELENOMETHIONINE W - 227
1gg4_A_2241gg4   A     MSESELENOMETHIONINE I - 231
1gg4_A_2241gg4   A     MSESELENOMETHIONINE V - 236
1gq6_A_2061gq6   A     MNMANGANESE (II) ION D - 235
1hdr_*_591hdr   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Q - 62
1hdr_*_591hdr   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE C - 84
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gq6_A_2061gq6   A MNAMN BINDING SITE - CHAIN AD - 235

Clusters included in this Subclass
CLUSTER: HE.4.147
CLUSTER: HE.5.87