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Information on SUBCLASS 2.5.1
Subclass Accession number: 557
Subclass: 2.5.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 55

Average sequence ID (%) : 12.3 +/- 16.2
Average RMSD (Å) : 0.411 +/- 0.178

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXXXXX
(φψ)-conformation: abplbb
Pattern: x[adegknqrst][dehknpqs][adgknqrst]xx
Conservation:-0.7010.0060.6351.660-0.611-0.988
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a1x_*_131a1x   -1722HQEGIYEETTEEabpvbb
1af7_*_2731af7   -276281RGQTVYEETTEEabplbb
1aih_A_2191aih   A219224VMPYKIEETTEExbpvbb
1aop_*_4911aop   -496501KAPGRYEETTEEabpvbb
1c8u_A_151c8u   A1722IEEGLFEETTEEabxvbb
1dci_A_571dci   A6267AQKHVLEETTEEabpvbb
1deu_A_1101deu   A113118NEFKECEETTEEabpvbb
1dl5_A_1841dl5   A190195KKDPYLEETTEExbpwbb
1dqs_A_3681dqs   A369374SAIGTPEETTEEabxvbx
1dqt_A_661dqt   A7075FNESRVEETTEEbbpvbb
1ejd_A_1351ejd   A138143LEEGYVEETTEEbbpgbb
1ekm_A_4441ekm   A447452VYPNVNEETTEEabpvbb
1f42_A_21f42   A49LKKDVYEETTEEabpvbb
1g2n_A_3221g2n   A325330LMPGMTEETTEEabpvbb
1gg4_A_3181gg4   A322327LAENQLEETTEEabxUbb
1gw0_A_121gw0   A1318WSDGFDEETTEEabpvbb
1h5q_A_1571h5q   A158163SSLNGSEETTEEabplbx
1hhs_A_381hhs   A3944TYEGLLEETTEEabpvbx
1hp1_A_2591hp1   A260265AAENKKEETTEEabplbx
1i7q_A_931i7q   A96101ARPNGREETTEExbxlbb
1ihk_A_951ihk   A100105IAVGLVEETTEEabpvbb
1ivw_A_4191ivw   A422427LAPGLGEETTEEabpvxb
1j75_A_1581j75   A161166PEPATWEETTEEabxlbb
1jdw_*_3081jdw   -311316IGPGIVEETTEEabxvbb
1jje_A_81jje   A1217LDEGVYEETTEEabpvbb
1jk4_A_651jk4   A6873AAAGICEETTEEabxvbb
1jlx_A_2461jlx   A251256HDFNVIEETTEEabpvbb
1k32_A_2121k32   A217222VNSGAFEETTEEabpvbb
1k75_A_1071k75   A111116TQPGVREETTEEabpvbx
1ksi_A_4301ksi   A433438VSANSIEETTEEabpvbb
1li4_A_3171li4   A321326IKPQVDEETTEEabpvbb
1lvl_*_1181lvl   -121126LDGKQVEETTEEabxNbb
1m3q_A_481m3q   A5055QSPAHWEETTEEabpvbb
1mkp_*_2081mkp   -210215ILPFLYEETTEEabpvbb
1n62_C_1521n62   C154159QGAYFTEETTEEabxvbb
1n67_A_4631n67   A467472PNPNQYEETTEEabplbb
1nlf_A_221nlf   A2328VLPNMVEETTEEabpvbx
1nrz_A_1151nrz   A117122LTKAVSEETTEEabpvbb
1nsj_*_1841nsj   -185190AFPGKKEETTEEabpvbx
1oac_A_5121oac   A515520IDHNIVEETTEEabxvbb
1oej_A_911oej   A95100HRNNETEETTEEbbpvbb
1ofz_A_1681ofz   A173178IGPGRLEETTEEabpvbb
1omz_A_1801omz   A186191TSSGIYEETTEEabpvbb
1p32_A_1171p32   A123128KVAGEKEETTEEbbpvbb
1p9l_A_1921p9l   A199204GTEGETEETTEEbbpvbb
1pii_*_4311pii   -432437SQPGIKEETTEEabpvbx
1q1u_A_441q1u   A4954VGLRVVEETTEEabxlbb
1qb7_A_31qb7   A611VSPNSFEETTEEabplbb
1qtn_A_3181qtn   A318323GDKGIIEETTEEbbpvbb
1rhf_A_471rhf   A5358VSEQHWEETTEEabxvbb
1rwh_A_3841rwh   A388393RGPGWAEETTEEbbpvbb
1vhr_A_301vhr   A3338VTPRIYEETTEEabpvbb
1vrt_A_3261vrt   A332337QGQGQWEETTEEabxvbb
1vrt_A_3361vrt   A343348QEPFKNEETTEEabpvxx
2hip_A_372hip   A4146VQDGWGEETTEEabpvbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dl5_A_1841dl5   A     CDCADMIUM ION Y - 194
1ejd_A_1351ejd   A     PO4PHOSPHATE ION E - 135
1ejd_A_1351ejd   A     PO4PHOSPHATE ION K - 137
1ejd_A_1351ejd   A     PO4PHOSPHATE ION K - 144
1ejd_A_1351ejd   A     HAICYCLOHEXYLAMMONIUM ION K - 144
1ejd_A_1351ejd   A     HAICYCLOHEXYLAMMONIUM ION A - 145
1ejd_A_1351ejd   A     PO4PHOSPHATE ION S - 146
1f42_A_21f42   A     NAGN-ACETYL-D-GLUCOSAMINE W - 2
1f42_A_21f42   A     MANALPHA-D-MANNOSE W - 2
1f42_A_21f42   A     NAGN-ACETYL-D-GLUCOSAMINE E - 3
1f42_A_21f42   A     MANALPHA-D-MANNOSE E - 3
1f42_A_21f42   A     NAGN-ACETYL-D-GLUCOSAMINE L - 4
1f42_A_21f42   A     NAGN-ACETYL-D-GLUCOSAMINE V - 10
1f42_A_21f42   A     NAGN-ACETYL-D-GLUCOSAMINE E - 12
1g2n_A_3221g2n   A     EPHL-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE M - 323
1g2n_A_3221g2n   A     EPHL-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE L - 325
1g2n_A_3221g2n   A     EPHL-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE L - 331
1gg4_A_3181gg4   A     MSESELENOMETHIONINE L - 327
1gg4_A_3181gg4   A     MSESELENOMETHIONINE L - 329
1gg4_A_3181gg4   A     MSESELENOMETHIONINE D - 330
1jje_A_81jje   A     ZNZINC ION K - 8
1jje_A_81jje   A     ACTACETATE ION K - 8
1jje_A_81jje   A     ZNZINC ION E - 10
1jje_A_81jje   A     ACTACETATE ION E - 10
1jje_A_81jje   A     ZNZINC ION V - 18
1jje_A_81jje   A     ZNZINC ION T - 20
1jje_A_81jje   A     ACTACETATE ION T - 20
1jje_A_81jje   A     ACTACETATE ION F - 22
1k75_A_1071k75   A     MSESELENOMETHIONINE Q - 118
1k75_A_1071k75   A     MSESELENOMETHIONINE Q - 119
1lvl_*_1181lvl   *     FADFLAVIN-ADENINE DINUCLEOTIDE A - 118
1lvl_*_1181lvl   *     FADFLAVIN-ADENINE DINUCLEOTIDE K - 119
1n62_C_1521n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 152
1ofz_A_1681ofz   A     AFLALPHA-L-FUCOSE I - 173
1ofz_A_1681ofz   A     FULBETA-L-FUCOSE G - 176
1ofz_A_1681ofz   A     FULBETA-L-FUCOSE R - 177
1ofz_A_1681ofz   A     AFLALPHA-L-FUCOSE R - 177
1ofz_A_1681ofz   A     FULBETA-L-FUCOSE L - 178
1ofz_A_1681ofz   A     AFLALPHA-L-FUCOSE R - 179
1ofz_A_1681ofz   A     AFLALPHA-L-FUCOSE Y - 181
1omz_A_1801omz   A     UD2URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE Y - 193
1p9l_A_1921p9l   A     PDCPYRIDINE-2,6-DICARBOXYLIC ACID A - 192
1p9l_A_1921p9l   A     PG4TETRAETHYLENE GLYCOL E - 195
1p9l_A_1921p9l   A     PG4TETRAETHYLENE GLYCOL L - 197
1p9l_A_1921p9l   A     PG4TETRAETHYLENE GLYCOL T - 204
1p9l_A_1921p9l   A     PG4TETRAETHYLENE GLYCOL T - 206
1qtn_A_3181qtn   A     ASAASPARTIC ALDEHYDE G - 318
1rhf_A_471rhf   A     MSESELENOMETHIONINE E - 55
1rhf_A_471rhf   A     MSESELENOMETHIONINE Q - 56
1rhf_A_471rhf   A     MSESELENOMETHIONINE H - 57
1rhf_A_471rhf   A     MSESELENOMETHIONINE W - 58
2hip_A_372hip   A     FS4IRON/SULFUR CLUSTER W - 37
2hip_A_372hip   A     FS4IRON/SULFUR CLUSTER R - 47
2hip_A_372hip   A     FS4IRON/SULFUR CLUSTER C - 48
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ofz_A_1681ofz   A AC4AFL BINDING SITE FOR CHAIN AR - 179

Clusters included in this Subclass
CLUSTER: HA.2.7
CLUSTER: HA.3.17