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Information on SUBCLASS 3.34.1
Subclass Accession number: 5580
Subclass: 3.34.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 1 (>75 %)  
GO : GO:0016874 (>50 %)  
SCOP : 49817 (>75 %)  49818 (>75 %)  49823 (>75 %)  
 Number of loops: 4

Average sequence ID (%) : 48.1 +/- 20.9
Average RMSD (Å) : 0.375 +/- 0.096

Consensus geometry
d (Å): 15 delta (°): 45-90 theta (°): 45-90 rho (°): 45-90
Consensus Sequence: LYppXcX
(φψ)-conformation: aaGpabb
Pattern: [ADS][AKT]x[Q][QT][KNS][L][Y][QT][NR][AEPT][DNT][AT][TY][TV][S][V][GTV]
Conservation:-0.764-0.843-0.8861.436-0.391-0.3040.8212.666-0.2700.264-1.217-0.380-0.212-0.056-0.2360.8210.821-1.270
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1jsd_A_1781jsd   A178195DTVQTNLYTRTDTTTSVTHHHHHHHHS-S---EEEEaaaaaaaavbabbbbbbb
1jsm_A_1841jsm   A184201AAEQTKLYQNPTTYVSVGHHHHHHHHS-SS--EEEEaaaaaaaaGxabbbbbbb
1rv0_H_1881rv0   H188205STDQQSLYQNADAYVSVGHHHHHHHHS-SS--EEEEaaaaaaaaUxabxbbbbb
1rvx_A_1881rvx   A188205SKEQQNLYQNENAYVSVVHHHHHHHHS-SS--EEEEaaaaaaaaGxabxbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1rvx_A_1881rvx   A     SIAO-SIALIC ACID E - 190
1rvx_A_1881rvx   A     GALD-GALACTOSE E - 190
1rvx_A_1881rvx   A     SIAO-SIALIC ACID L - 194
1rvx_A_1881rvx   A     SIAO-SIALIC ACID Y - 195

Clusters included in this Subclass
CLUSTER: HE.5.240