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Information on SUBCLASS 3.40.1
Subclass Accession number: 5586
Subclass: 3.40.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0004372 (>50 %)  GO:0008168 (>50 %)  GO:0016741 (>50 %)  
SCOP : 53327 (>50 %)  53328 (>50 %)  53329 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 19.0 +/- 23.0
Average RMSD (Å) : 0.367 +/- 0.058

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XhXGXhh
(φψ)-conformation: aaplabb
Pattern: [DGP][AIP][FL][NV][GQS]x[FWY][AKN][G][GKR][LMV][CL][NY][AI]
Conservation:-0.540-0.9860.555-0.701-0.540-0.9861.316-0.6892.653-0.4660.2020.2290.219-0.267
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ga8_A_1881ga8   A190203DILNGLFKGGVCYAHHHHHHHTTSEEEEaaaaaaapvabxxx
1jkx_A_941jkx   A94107PAFVSHYAGRLLNIHHHHHHTTTSEEEEaaaaaaapvabbbb
1meo_A_941meo   A94107GPFVQKWNGKMLNIHHHHHHTTTSEEEEaaaaaaapvabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ga8_A_1881ga8   A     MSESELENOMETHIONINE D - 188
1ga8_A_1881ga8   A     UPFURIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUOROGALACTOSE D - 188
1ga8_A_1881ga8   A     DEL4-DEOXYLACTOSE Q - 189
1ga8_A_1881ga8   A     UPFURIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUOROGALACTOSE Q - 189
1ga8_A_1881ga8   A     MSESELENOMETHIONINE D - 190
1ga8_A_1881ga8   A     MSESELENOMETHIONINE I - 191
1ga8_A_1881ga8   A     UPFURIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUOROGALACTOSE L - 192
1ga8_A_1881ga8   A     MSESELENOMETHIONINE N - 193
1ga8_A_1881ga8   A     MSESELENOMETHIONINE G - 194
1ga8_A_1881ga8   A     MSESELENOMETHIONINE L - 195
1ga8_A_1881ga8   A     MSESELENOMETHIONINE F - 196
1ga8_A_1881ga8   A     MSESELENOMETHIONINE K - 197
1ga8_A_1881ga8   A     MSESELENOMETHIONINE Y - 202
1jkx_A_941jkx   A     138N-[5'-O-PHOSPHONO-RIBOFURANOSYL]-2-[2-HYDROXY-2-[4-[GLUTAMIC ACID]-N-CARBONYLPHENYL]-3-[2-AMINO-4-HYDROXY -QUINAZOLIN-6-YL]-PROPANYLAMINO]-ACETAMIDE P - 94
1jkx_A_941jkx   A     138N-[5'-O-PHOSPHONO-RIBOFURANOSYL]-2-[2-HYDROXY-2-[4-[GLUTAMIC ACID]-N-CARBONYLPHENYL]-3-[2-AMINO-4-HYDROXY -QUINAZOLIN-6-YL]-PROPANYLAMINO]-ACETAMIDE V - 97
1jkx_A_941jkx   A     138N-[5'-O-PHOSPHONO-RIBOFURANOSYL]-2-[2-HYDROXY-2-[4-[GLUTAMIC ACID]-N-CARBONYLPHENYL]-3-[2-AMINO-4-HYDROXY -QUINAZOLIN-6-YL]-PROPANYLAMINO]-ACETAMIDE L - 104
1jkx_A_941jkx   A     138N-[5'-O-PHOSPHONO-RIBOFURANOSYL]-2-[2-HYDROXY-2-[4-[GLUTAMIC ACID]-N-CARBONYLPHENYL]-3-[2-AMINO-4-HYDROXY -QUINAZOLIN-6-YL]-PROPANYLAMINO]-ACETAMIDE N - 106
1jkx_A_941jkx   A     138N-[5'-O-PHOSPHONO-RIBOFURANOSYL]-2-[2-HYDROXY-2-[4-[GLUTAMIC ACID]-N-CARBONYLPHENYL]-3-[2-AMINO-4-HYDROXY -QUINAZOLIN-6-YL]-PROPANYLAMINO]-ACETAMIDE I - 107
1jkx_A_941jkx   A     138N-[5'-O-PHOSPHONO-RIBOFURANOSYL]-2-[2-HYDROXY-2-[4-[GLUTAMIC ACID]-N-CARBONYLPHENYL]-3-[2-AMINO-4-HYDROXY -QUINAZOLIN-6-YL]-PROPANYLAMINO]-ACETAMIDE H - 108

Clusters included in this Subclass
CLUSTER: HE.3.222