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Information on SUBCLASS 2.5.5
Subclass Accession number: 561
Subclass: 2.5.5 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 3.4 (>50 %)  3.4.21 (>50 %)  
GO : GO:0004175 (>75 %)  GO:0004252 (>75 %)  GO:0008233 (>75 %)  GO:0008236 (>75 %)  
SCOP : 50493 (>75 %)  50494 (>75 %)  50514 (>75 %)  
Number of loops: 4

Average sequence ID (%) : 5.6 +/- 10.1
Average RMSD (Å) : 0.575 +/- 0.222

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: ppXcXp
(φψ)-conformation: bbplbb
Pattern: [DHRY]xx[AGK]x[DKPS]
Conservation:0.090-1.202-0.4351.798-0.3410.090
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aa6_*_6251aa6   -629634HSRKGKEETTEEbbxlbb
1aop_*_3691aop   -369374DYPARPEETTEExbpvbx
1pgu_A_3211pgu   A324329YELGHDEETTEEbbpvba
1vjz_A_871vjz   A8792RAPGYSEETTEEbbpvbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1pgu_A_3211pgu   A     ZNZINC ION H - 328
1pgu_A_3211pgu   A     ZNZINC ION D - 329
1pgu_A_3211pgu   A     MSESELENOMETHIONINE E - 330
1pgu_A_3211pgu   A     ZNZINC ION E - 330
1pgu_A_3211pgu   A     MSESELENOMETHIONINE I - 335
1vjz_A_871vjz   A     MSESELENOMETHIONINE R - 87
1vjz_A_871vjz   A     MSESELENOMETHIONINE A - 88

Clusters included in this Subclass
CLUSTER: HA.1.53