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Information on SUBCLASS 4.4.3
Subclass Accession number: 5618
Subclass: 4.4.3 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 24.4 +/- 26.0
Average RMSD (Å) : 0.475 +/- 0.149

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XpGphphh
(φψ)-conformation: aagababb
Pattern: x[AGS][AQT][aegr][ail][eksty][AKLM][AGLV][akm][egknr][G][dehs][LTVY][CDESWY][AGIY][agiltv]x
Conservation:-0.1460.7640.341-0.576-0.026-0.636-0.060-0.298-0.330-0.5153.592-0.1400.125-0.603-0.355-0.540-0.597
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a77_*_1531a77   -154170EAQASYMAKKGDVWAVVHHHHHHHHHHTSSSEEEaaaaaaaaaavababxb
1b43_A_1521b43   A153169EAQAAYMAAKGSVYASAHHHHHHHHHHTSSSEEEaaaaaaaaaagababxb
1eex_A_2051eex   A205221EATELKLGMLGHTCYAEHHHHHHHHHTT--SEEEaaaaaaaaaavababba
1gtk_A_1521gtk   A152168VGTRLSKLDNGEYDAIIHHHHHHHHHTTS-SEEEaaaaaaaaaavababbb
1ii5_A_541ii5   A5470ISAGITAVAEGELDILIHHHHHHHHHTTS-SEEEaaaaaaaaaavababbb
1iwp_A_2061iwp   A206222EATELELGMRGLTSYAEHHHHHHHHHTTS-SEEEaaaaaaaaaavababba
1nn4_A_431nn4   A4763ASQVALAVAGGEVDGGIHHHHHHHHHTTSSSEEEaaaaaaaaaaUababbb
1rxw_A_1521rxw   A153169EAQAAYMAAKGDVEYTGHHHHHHHHHTTSSSEEEaaaaaaaaaavababxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a77_*_1531a77   *     MGMAGNESIUM ION G - 153
1a77_*_1531a77   *     MGMAGNESIUM ION E - 154
1eex_A_2051eex   A     COYCO-(ADENIN-9-YL-PENTYL)-COBALAMIN E - 205
1eex_A_2051eex   A     COYCO-(ADENIN-9-YL-PENTYL)-COBALAMIN E - 208
1eex_A_2051eex   A     PGO1,2-PROPANEDIOL E - 221
1eex_A_2051eex   A     COYCO-(ADENIN-9-YL-PENTYL)-COBALAMIN T - 222
1eex_A_2051eex   A     PGO1,2-PROPANEDIOL T - 222
1eex_A_2051eex   A     COYCO-(ADENIN-9-YL-PENTYL)-COBALAMIN I - 223
1eex_A_2051eex   A     COYCO-(ADENIN-9-YL-PENTYL)-COBALAMIN S - 224
1gtk_A_1521gtk   A     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID V - 152
1gtk_A_1521gtk   A     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID R - 155
1gtk_A_1521gtk   A     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID I - 168
1gtk_A_1521gtk   A     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID L - 169
1gtk_A_1521gtk   A     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID A - 170
1ii5_A_541ii5   A     GLUGLUTAMIC ACID I - 54
1ii5_A_541ii5   A     GLUGLUTAMIC ACID P - 72
1ii5_A_541ii5   A     GLUGLUTAMIC ACID I - 73
1ii5_A_541ii5   A     GLUGLUTAMIC ACID S - 74
1iwp_A_2061iwp   A     B12COBALAMIN E - 206
1iwp_A_2061iwp   A     B12COBALAMIN E - 209
1iwp_A_2061iwp   A     PGO1,2-PROPANEDIOL E - 222
1iwp_A_2061iwp   A     B12COBALAMIN T - 223
1iwp_A_2061iwp   A     PGO1,2-PROPANEDIOL T - 223
1iwp_A_2061iwp   A     B12COBALAMIN V - 224
1iwp_A_2061iwp   A     B12COBALAMIN S - 225
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gtk_A_1521gtk   A AC1DPM BINDING SITE FOR CHAIN AA - 170

Clusters included in this Subclass
CLUSTER: HE.4.145
CLUSTER: HE.6.97