Logo
Information on SUBCLASS 4.6.6
Subclass Accession number: 5627
Subclass: 4.6.6 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 3.9 +/- 5.5
Average RMSD (Å) : 0.967 +/- 0.404

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXXXpXhX
(φψ)-conformation: aabaaabb
Pattern: [ILY]x[ADK][ACL][AEQ][EKQ]x[ILV][AEL][AES][DV][EP][DNQ]x[IVY]xx
Conservation:0.290-1.182-0.6920.0440.1671.271-1.1821.394-1.1820.0440.4041.9990.780-0.9370.535-0.569-1.182
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1f60_B_11811f60   B11811197LDDLQQSIEEDEDHVQSHHHHHHHHHT-TTTEEEaaaaaaaaaaxaaabab
1k87_A_4591k87   A466482YLACAKKLLAVPNLIYPHHHHHHHHHT-TTTEEEaaaaaaaaaabaaabbw
1oas_A_1181oas   A123139IQKAEEIVASDPQKYLLHHHHHHHHHT-TTTEEEaaaaaaaaaabaaabbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1k87_A_4591k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE K - 459
1k87_A_4591k87   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL K - 459
1k87_A_4591k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 460
1k87_A_4591k87   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL V - 460
1k87_A_4591k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 461
1k87_A_4591k87   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL Y - 461
1k87_A_4591k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 462
1k87_A_4591k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE D - 463
1k87_A_4591k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 466
1k87_A_4591k87   A     1PEPENTAETHYLENE GLYCOL L - 474
1k87_A_4591k87   A     1PEPENTAETHYLENE GLYCOL A - 475
1k87_A_4591k87   A     1PEPENTAETHYLENE GLYCOL V - 476
1k87_A_4591k87   A     1PEPENTAETHYLENE GLYCOL P - 477
1k87_A_4591k87   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 485

Clusters included in this Subclass
CLUSTER: HE.4.376