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Information on SUBCLASS 4.9.1
Subclass Accession number: 5638
Subclass: 4.9.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 12

Average sequence ID (%) : 55.0 +/- 29.1
Average RMSD (Å) : 0.400 +/- 0.295

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: pXXXGhpX
(φψ)-conformation: aabplpbp
Pattern: [EW][adet][DEQ][AM][AE][EHKNRSW][FIL][CN][kmt][EKQ][q]x[aknt][DG][ags][EHR][LT]
Conservation:2.086-1.5920.6620.0670.382-1.1330.2861.402-0.7110.489-0.431-1.095-1.0420.857-0.9200.6260.067
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c3a_B_2251c3a   B225241WEDAEKFCTQQHKGSHLHHHHHHHHHHHSTT-EEaaaaaaaaaaabxvbbp
1fvu_B_4231fvu   B423439WDDAEEFCTEQQTGAHLHHHHHHHHHHHSTT-EEaaaaaaaaaaabpvxbx
1iod_A_231iod   A2339WADAESFCTKQVNGGHLHHHHHHHHHHHSTT-EEaaaaaaaaaaabpvxbx
1iod_B_2231iod   B223239WADAENFCTQQHTGSHLHHHHHHHHHHHSTT-EEaaaaaaaaaaabpvxbx
1j34_A_231j34   A2339WDDAERFCTEQAKGGHLHHHHHHHHHHHSTT-EEaaaaaaaaaaabxvxbx
1j34_B_2231j34   B223239WADAENFCTQQHAGGHLHHHHHHHHHHHSTT-EEaaaaaaaaaaabpvxbx
1jwi_B_251jwi   B2541WADAEKFCKELVNGGHLHHHHHHHHHHHSTT-EEaaaaaaaaaaabxvxbx
1od6_A_961od6   A99115ELQMAHLNRQLYPGLETHHHHHHHHHHHTTT-EEaaaaaaaaaaabpvxxb
1oz7_B_231oz7   B2339WADAEKFCTKQHKDGHLHHHHHHHHHHHSTT-EEaaaaaaaaaaabxUxbp
1ukm_A_251ukm   A2541WYEAERFCTEQAKDGHLHHHHHHHHHHHSTT-EEaaaaaaaaaaabxvxbp
1ukm_B_221ukm   B2238WTEAEEICMQQHKGSRLHHHHHHHHHHHSTT-EEaaaaaaaaaaabxvxbp
1umr_A_251umr   A2541WEDAEWFCTKQAKGAHLHHHHHHHHHHHSTT-EEaaaaaaaaaaabpvxbp
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1od6_A_961od6   A     PNS4'-PHOSPHOPANTETHEINE Y - 98
1od6_A_961od6   A     PNS4'-PHOSPHOPANTETHEINE E - 99
1od6_A_961od6   A     PNS4'-PHOSPHOPANTETHEINE Q - 101
1od6_A_961od6   A     PNS4'-PHOSPHOPANTETHEINE M - 102
1od6_A_961od6   A     PNS4'-PHOSPHOPANTETHEINE A - 103
1od6_A_961od6   A     PNS4'-PHOSPHOPANTETHEINE L - 105
1od6_A_961od6   A     PNS4'-PHOSPHOPANTETHEINE N - 106
1od6_A_961od6   A     PNS4'-PHOSPHOPANTETHEINE L - 109
1ukm_B_221ukm   B     NAGN-ACETYL-D-GLUCOSAMINE W - 22
1ukm_B_221ukm   B     NAGN-ACETYL-D-GLUCOSAMINE T - 23
1ukm_B_221ukm   B     NAGN-ACETYL-D-GLUCOSAMINE E - 24
1ukm_B_221ukm   B     NAGN-ACETYL-D-GLUCOSAMINE E - 27
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1od6_A_961od6   A AC2SO4 BINDING SITE FOR CHAIN AH - 104
1od6_A_961od6   A AC2SO4 BINDING SITE FOR CHAIN AR - 107
1od6_A_961od6   A AC2SO4 BINDING SITE FOR CHAIN AQ - 108
1od6_A_961od6   A AC4SO4 BINDING SITE FOR CHAIN AY - 110

Clusters included in this Subclass
CLUSTER: HE.3.71