ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.9.1

Subclass Accession number: 5638
Subclass: 4.9.1

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 12

Average sequence ID (%) : 55.0 +/- 29.1
Average RMSD (Å) : 0.400 +/- 0.295

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 90-135

rho (°): 270-315

Consensus Sequence:	pXXXGhpX
(φψ)-conformation:	aabplpbp

Pattern:	[EW]	[adet]	[DEQ]	[AM]	[AE]	[EHKNRSW]	[FIL]	[CN]	[kmt]	[EKQ]	[q]	x	[aknt]	[DG]	[ags]	[EHR]	[LT]
Conservation:	2.086	-1.592	0.662	0.067	0.382	-1.133	0.286	1.402	-0.711	0.489	-0.431	-1.095	-1.042	0.857	-0.920	0.626	0.067

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1c3a_B_225	1c3a	B	225	241	WEDAEKFCTQQHKGSHL	HHHHHHHHHHHSTT-EE	aaaaaaaaaaabxvbbp
1fvu_B_423	1fvu	B	423	439	WDDAEEFCTEQQTGAHL	HHHHHHHHHHHSTT-EE	aaaaaaaaaaabpvxbx
1iod_A_23	1iod	A	23	39	WADAESFCTKQVNGGHL	HHHHHHHHHHHSTT-EE	aaaaaaaaaaabpvxbx
1iod_B_223	1iod	B	223	239	WADAENFCTQQHTGSHL	HHHHHHHHHHHSTT-EE	aaaaaaaaaaabpvxbx
1j34_A_23	1j34	A	23	39	WDDAERFCTEQAKGGHL	HHHHHHHHHHHSTT-EE	aaaaaaaaaaabxvxbx
1j34_B_223	1j34	B	223	239	WADAENFCTQQHAGGHL	HHHHHHHHHHHSTT-EE	aaaaaaaaaaabpvxbx
1jwi_B_25	1jwi	B	25	41	WADAEKFCKELVNGGHL	HHHHHHHHHHHSTT-EE	aaaaaaaaaaabxvxbx
1od6_A_96	1od6	A	99	115	ELQMAHLNRQLYPGLET	HHHHHHHHHHHTTT-EE	aaaaaaaaaaabpvxxb
1oz7_B_23	1oz7	B	23	39	WADAEKFCTKQHKDGHL	HHHHHHHHHHHSTT-EE	aaaaaaaaaaabxUxbp
1ukm_A_25	1ukm	A	25	41	WYEAERFCTEQAKDGHL	HHHHHHHHHHHSTT-EE	aaaaaaaaaaabxvxbp
1ukm_B_22	1ukm	B	22	38	WTEAEEICMQQHKGSRL	HHHHHHHHHHHSTT-EE	aaaaaaaaaaabxvxbp
1umr_A_25	1umr	A	25	41	WEDAEWFCTKQAKGAHL	HHHHHHHHHHHSTT-EE	aaaaaaaaaaabpvxbp

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1od6_A_96	1od6	A	PNS4'-PHOSPHOPANTETHEINE	Y - 98
1od6_A_96	1od6	A	PNS4'-PHOSPHOPANTETHEINE	E - 99
1od6_A_96	1od6	A	PNS4'-PHOSPHOPANTETHEINE	Q - 101
1od6_A_96	1od6	A	PNS4'-PHOSPHOPANTETHEINE	M - 102
1od6_A_96	1od6	A	PNS4'-PHOSPHOPANTETHEINE	A - 103
1od6_A_96	1od6	A	PNS4'-PHOSPHOPANTETHEINE	L - 105
1od6_A_96	1od6	A	PNS4'-PHOSPHOPANTETHEINE	N - 106
1od6_A_96	1od6	A	PNS4'-PHOSPHOPANTETHEINE	L - 109
1ukm_B_22	1ukm	B	NAGN-ACETYL-D-GLUCOSAMINE	W - 22
1ukm_B_22	1ukm	B	NAGN-ACETYL-D-GLUCOSAMINE	T - 23
1ukm_B_22	1ukm	B	NAGN-ACETYL-D-GLUCOSAMINE	E - 24
1ukm_B_22	1ukm	B	NAGN-ACETYL-D-GLUCOSAMINE	E - 27

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1od6_A_96	1od6	A	AC2SO4 BINDING SITE FOR CHAIN A	H - 104
1od6_A_96	1od6	A	AC2SO4 BINDING SITE FOR CHAIN A	R - 107
1od6_A_96	1od6	A	AC2SO4 BINDING SITE FOR CHAIN A	Q - 108
1od6_A_96	1od6	A	AC4SO4 BINDING SITE FOR CHAIN A	Y - 110

Clusters included in this Subclass

CLUSTER: HE.3.71