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Information on SUBCLASS 2.6.1
Subclass Accession number: 564
Subclass: 2.6.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 74

Average sequence ID (%) : 8.6 +/- 11.8
Average RMSD (Å) : 0.461 +/- 0.213

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXXXXX
(φψ)-conformation: bbpgbb
Pattern: xxxx[adegknqst]xxxxx
Conservation:-0.141-0.880-0.4130.4762.462-0.674-0.145-0.481-0.204-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ae9_A_3431ae9   A343352RDDRGREWDKEE-SS-EEEExxxxgxbbxx
1aih_A_2191aih   A219227.VMPYKITFT.EETTEEEEE.xbpvbbbbb
1b24_A_701b24   A7281VKGDTRYELREE-SS-EEEEbbxxgbbbbb
1bif_*_4181bif   -423432TPVAYGCKVEEE-SSSEEEEbwbxvbbxbb
1c8u_A_151c8u   A1624KIEEGLFRG.EEETTEEEE.xabxvbbbb.
1cvr_A_851cvr   A8592KITPGIKS..EEETTEEE..xbbpvbbb..
1cyx_*_1271cyx   -132141VSMDWKWFFIEEETTEEEEEbxbxvbbbbb
1dci_A_571dci   A6170SAQKHVLHVQEEETTEEEEExabpvbbbbb
1deu_A_1101deu   A112120CNEFKECHA.EEETTEEEE.babpvbbbx.
1dl5_A_2651dl5   A268277EFLDDRMRIYEEETTEEEEExxbxlbbbbb
1dqt_A_661dqt   A6978TFNESRVNLTEEETTEEEEEbbbpvbbxxb
1dx5_I_4361dx5   I438447HNLPGTFECIEE-SSSEEEEbxbxgbbbbx
1edm_B_611edm   B6372KDDINSYECWEEETTEEEEEbxbxlbbbbx
1ei5_A_2821ei5   A289298GALRGWRCQREEETTEEEEEbbbpvbbbbb
1ejd_A_1351ejd   A137146KLEEGYVKASEEETTEEEEEbbbpgbbbbb
1epa_A_751epa   A7887VTRLSGKKEVEEETTEEEEEbbxxlbbbbb
1erj_A_3581erj   A361370TGCNKTTQVYEE-BS-EEEEbbbxgbbbbb
1f32_A_721f32   A7482FNFVGCSVL.EEETTEEEE.bbbxgbbbb.
1f3u_A_411f3u   A4655AKTQGRTEVSEEETTEEEEEbbbxlbbbbb
1g0u_G_2101g0u   G214222VATKDKFFT.EEETTEEEE.bbbpvbbbb.
1g0u_I_21g0u   I615MTGKDCVAIAEEETTEEEEEbbbxlbbbbb
1g1t_A_1311g1t   A134143VETINNYTCKEEETTEEEEEbxbxlbbbbb
1g2n_A_3221g2n   A324332CLMPGMTLH.EEETTEEEE.xabpvbbbx.
1g38_A_2981g38   A298303.LKPGWV....EETTEE....xbxvbb...
1gg4_A_3181gg4   A321330QLAENQLLLDEEETTEEEEExabxUbbbbx
1gmu_A_1001gmu   A100109QIMPGELRYHEEETTEEEEEbbbxvbbbbp
1gsm_A_1791gsm   A186195MRLPGLELSHEEETTEEEEEbbbpvbbbbb
1gw0_A_121gw0   A1218CWSDGFD...EEETTEE...xabpvbb...
1gx3_A_2251gx3   A228237VHRSGATEHIEEETTEEEEEbbbxvbbbbb
1h6d_A_3531h6d   A355364VQTPGHANQSEEETTEEEEEbbbpvbbxxb
1hbn_B_2831hbn   B286295KELTDYKVYGEEETTEEEEEbbxxlbxxxb
1hg8_A_2481hg8   A269278KSNSGATGTIEEETT--EEEbbxxvbbbbb
1i7d_A_241i7d   A2432RKGDGFIEC.EEETTEEEE.bxbxgbbxb.
1i7q_A_931i7q   A95104QARPNGRELTEEETTEEEEEbxbxlbbbbb
1ihk_A_951ihk   A99108SIAVGLVSIREEETTEEEEExabpvbbbbb
1ik9_A_941ik9   A99108KNLKDVSFRLEE-SS-EEEEbxxxvbbbpa
1ivw_A_4191ivw   A421429QLAPGLGAP.EEETTEEEE.xabpvxbbx.
1ivy_A_4071ivy   A414423KEFSHIAFLTEEESSEEEEEbbbxvbbbbb
1iz5_A_1541iz5   A158167IARENEFIMKEEETTEEEEEbbbplbbbbb
1j75_A_1581j75   A160168SPEPATWSI.EEETTEEEE.babxlbbbx.
1jdw_*_3081jdw   -310318IIGPGIVLS.EEETTEEEE.xabxvbbxb.
1jje_A_81jje   A1120KLDEGVYVHTEEETTEEEEExabpvbbbbb
1kjo_A_171kjo   A2229TTYSTYYY..EEESSSEE..bbbbgbbb..
1kuu_A_301kuu   A3342SIQEERVAVVEEETTEEEEExxbxlbbbbb
1li4_A_3171li4   A320329NIKPQVDRYREEETTEEEEExabpvbbbxb
1lvl_*_1181lvl   -120128VLDGKQVEV.EEETTEEEE.xabxNbbbb.
1m72_A_1371m72   A137143.GELGMLY...EETTEEE...bbpvbbb..
1mkp_*_2081mkp   -209217EILPFLYLG.EEETTEEEE.xabpvbbbb.
1mla_*_1561mla   -161170FNSPGQVVIAEEETTEEEEExabpvbbbbb
1n62_C_1521n62   C153159YQGAYFT...EEETTEE...babxvbb...
1nrz_A_1151nrz   A116123QLTKAVSL..EEETTEEE..xabpvbbb..
1nzi_A_1311nzi   A133142NNFIGGYFCSEEETTEEEEEbxbxvbbbbb
1o63_A_341o63   A3441REGKDIVC..EEETTEEE..bbbpvbbb..
1o94_A_5921o94   A596605RIEPGRMEIYEEETTEEEEEbbbpvbbxbb
1oej_A_911oej   A94103FHRNNETTSCEEETTEEEEEbbbpvbbbbb
1ofz_A_1681ofz   A172181AIGPGRLRIYEEETTEEEEExabpvbbbbb
1olz_A_401olz   A4352IGAREAVFAVEEEBTEEEEEbxbxvbbbbb
1osp_O_1561osp   O160169EVLKGYVLEGEE-SS-EEEEbxbxgbbbbb
1p32_A_1171p32   A122131RKVAGEKITVEEETTEEEEEbbbpvbbbbb
1p6p_A_461p6p   A5160SKTPKQTHSNEEETTEEEEEbbbpvbbbbb
1p9l_A_1921p9l   A198207FGTEGETLTIEEETTEEEEEbbbpvbbbbb
1plq_*_1571plq   -161170MITKETIKFVEEETTEEEEEbbbplbbbbb
1pyo_A_1131pyo   A113119.GVEGAIY...EETTEEE...bbpvbbx..
1qh5_A_1361qh5   A136141.LFVAGC....EETTEE....bbxvbb...
1qtn_A_3181qtn   A318324.GDKGIIY...EETTEEE...bbpvbbx..
1qwy_A_2421qwy   A247256IKEANSNNYQEEETTSSEEEbxxplbabbb
1rwh_A_3841rwh   A387396HRGPGWALSLEEETTEEEEEbbbpvbbxbx
1s7j_A_2341s7j   A238247EVKENRVIIGEEETTEEEEEbbbxvbbbbb
1tht_A_1641tht   A165173LDFEGHKLG.EEETTEEEE.bbbxNbbbx.
1usm_A_431usm   A4554TVEWGRVTVEEEETTEEEEEbbbpvbbbbb
1uuh_A_801uuh   A8089GFIEGHVVIPEEETTEEEEEbxbxvbbbbw
1uzp_A_16211uzp   A16231632INTFGSFQCREEETTEEEEEbxbxvbbbbb
1vjl_A_181vjl   A2231LGIEGTNRVLEEETTSSEEExxbpvbabbb
2cua_A_1142cua   A116125FHVEGTNINVEEETTSS-EEbbxxvbaxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b24_A_701b24   A     MSESELENOMETHIONINE L - 80
1b24_A_701b24   A     MSESELENOMETHIONINE V - 82
1bif_*_4181bif   *     ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER A - 426
1bif_*_4181bif   *     ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER Y - 427
1cyx_*_1271cyx   *     CUADINUCLEAR COPPER ION M - 134
1cyx_*_1271cyx   *     CUADINUCLEAR COPPER ION W - 136
1cyx_*_1271cyx   *     CUADINUCLEAR COPPER ION W - 138
1dl5_A_2651dl5   A     CDCADMIUM ION D - 271
1dl5_A_2651dl5   A     CDCADMIUM ION D - 272
1dl5_A_2651dl5   A     CDCADMIUM ION G - 278
1dx5_I_4361dx5   I     CACALCIUM ION N - 439
1dx5_I_4361dx5   I     CACALCIUM ION L - 440
1dx5_I_4361dx5   I     CACALCIUM ION P - 441
1dx5_I_4361dx5   I     CACALCIUM ION G - 442
1dx5_I_4361dx5   I     CACALCIUM ION T - 443
1dx5_I_4361dx5   I     CACALCIUM ION F - 444
1edm_B_611edm   B     CACALCIUM ION D - 64
1edm_B_611edm   B     CACALCIUM ION D - 65
1edm_B_611edm   B     CACALCIUM ION I - 66
1edm_B_611edm   B     CACALCIUM ION N - 67
1edm_B_611edm   B     CACALCIUM ION S - 68
1ejd_A_1351ejd   A     PO4PHOSPHATE ION E - 135
1ejd_A_1351ejd   A     PO4PHOSPHATE ION K - 137
1ejd_A_1351ejd   A     PO4PHOSPHATE ION K - 144
1ejd_A_1351ejd   A     HAICYCLOHEXYLAMMONIUM ION K - 144
1ejd_A_1351ejd   A     HAICYCLOHEXYLAMMONIUM ION A - 145
1ejd_A_1351ejd   A     PO4PHOSPHATE ION S - 146
1g2n_A_3221g2n   A     EPHL-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE M - 323
1g2n_A_3221g2n   A     EPHL-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE L - 325
1g2n_A_3221g2n   A     EPHL-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE L - 331
1gg4_A_3181gg4   A     MSESELENOMETHIONINE L - 327
1gg4_A_3181gg4   A     MSESELENOMETHIONINE L - 329
1gg4_A_3181gg4   A     MSESELENOMETHIONINE D - 330
1jje_A_81jje   A     ZNZINC ION K - 8
1jje_A_81jje   A     ACTACETATE ION K - 8
1jje_A_81jje   A     ZNZINC ION E - 10
1jje_A_81jje   A     ACTACETATE ION E - 10
1jje_A_81jje   A     ZNZINC ION V - 18
1jje_A_81jje   A     ZNZINC ION T - 20
1jje_A_81jje   A     ACTACETATE ION T - 20
1jje_A_81jje   A     ACTACETATE ION F - 22
1lvl_*_1181lvl   *     FADFLAVIN-ADENINE DINUCLEOTIDE A - 118
1lvl_*_1181lvl   *     FADFLAVIN-ADENINE DINUCLEOTIDE K - 119
1m72_A_1371m72   A     ASKDEHYDROXYMETHYLASPARTIC ACID G - 137
1m72_A_1371m72   A     ASKDEHYDROXYMETHYLASPARTIC ACID E - 138
1n62_C_1521n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 152
1nzi_A_1311nzi   A     CACALCIUM ION N - 134
1nzi_A_1311nzi   A     CACALCIUM ION F - 135
1nzi_A_1311nzi   A     CACALCIUM ION I - 136
1nzi_A_1311nzi   A     CACALCIUM ION G - 137
1nzi_A_1311nzi   A     CACALCIUM ION G - 138
1nzi_A_1311nzi   A     CACALCIUM ION Y - 139
1o63_A_341o63   A     MSESELENOMETHIONINE R - 34
1o63_A_341o63   A     MSESELENOMETHIONINE C - 41
1ofz_A_1681ofz   A     AFLALPHA-L-FUCOSE I - 173
1ofz_A_1681ofz   A     FULBETA-L-FUCOSE G - 176
1ofz_A_1681ofz   A     FULBETA-L-FUCOSE R - 177
1ofz_A_1681ofz   A     AFLALPHA-L-FUCOSE R - 177
1ofz_A_1681ofz   A     FULBETA-L-FUCOSE L - 178
1ofz_A_1681ofz   A     AFLALPHA-L-FUCOSE R - 179
1ofz_A_1681ofz   A     AFLALPHA-L-FUCOSE Y - 181
1p9l_A_1921p9l   A     PDCPYRIDINE-2,6-DICARBOXYLIC ACID A - 192
1p9l_A_1921p9l   A     PG4TETRAETHYLENE GLYCOL E - 195
1p9l_A_1921p9l   A     PG4TETRAETHYLENE GLYCOL L - 197
1p9l_A_1921p9l   A     PG4TETRAETHYLENE GLYCOL T - 204
1p9l_A_1921p9l   A     PG4TETRAETHYLENE GLYCOL T - 206
1qh5_A_1361qh5   A     ZNZINC ION F - 137
1qh5_A_1361qh5   A     GTTGLUTATHIONE F - 137
1qh5_A_1361qh5   A     GTTGLUTATHIONE C - 141
1qtn_A_3181qtn   A     ASAASPARTIC ALDEHYDE G - 318
1qwy_A_2421qwy   A     ZNZINC ION H - 260
1uuh_A_801uuh   A     MSESELENOMETHIONINE I - 82
1uuh_A_801uuh   A     MSESELENOMETHIONINE E - 83
1uuh_A_801uuh   A     MSESELENOMETHIONINE H - 85
1uuh_A_801uuh   A     MSESELENOMETHIONINE V - 87
1uuh_A_801uuh   A     MSESELENOMETHIONINE I - 88
1uuh_A_801uuh   A     MSESELENOMETHIONINE P - 89
1uzp_A_16211uzp   A     SMSAMARIUM (III) ION N - 1624
1uzp_A_16211uzp   A     SMSAMARIUM (III) ION T - 1625
1uzp_A_16211uzp   A     SMSAMARIUM (III) ION F - 1626
1uzp_A_16211uzp   A     SMSAMARIUM (III) ION G - 1627
1uzp_A_16211uzp   A     SMSAMARIUM (III) ION S - 1628
1uzp_A_16211uzp   A     SMSAMARIUM (III) ION F - 1629
2cua_A_1142cua   A     CUADINUCLEAR COPPER ION H - 114
2cua_A_1142cua   A     CUADINUCLEAR COPPER ION G - 115
2cua_A_1142cua   A     ZNZINC ION H - 117
2cua_A_1142cua   A     ZNZINC ION V - 118
2cua_A_1142cua   A     ZNZINC ION E - 119
2cua_A_1142cua   A     ZNZINC ION G - 120
2cua_A_1142cua   A     ZNZINC ION T - 121
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ofz_A_1681ofz   A AC4AFL BINDING SITE FOR CHAIN AR - 179
1uzp_A_16211uzp   A AC2SM BINDING SITE FOR CHAIN AN - 1624
1uzp_A_16211uzp   A AC2SM BINDING SITE FOR CHAIN AT - 1625
1uzp_A_16211uzp   A AC2SM BINDING SITE FOR CHAIN AS - 1628

Clusters included in this Subclass
CLUSTER: HA.1.7
CLUSTER: HA.3.206
CLUSTER: HA.3.9
CLUSTER: HA.4.112
CLUSTER: HA.5.178