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Information on SUBCLASS 4.15.2
Subclass Accession number: 5658
Subclass: 4.15.2 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0016874 (>75 %)  
 Number of loops: 7

Average sequence ID (%) : 19.0 +/- 19.0
Average RMSD (Å) : 0.857 +/- 0.244

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: pXXpXXVh
(φψ)-conformation: aapappbb
Pattern: x[aikt][aem]x[AFIKV][cik][DEKRS][cehks]x[DEKNPQT][ACKT][DKP][IV][lv][ACGIV][FITVY]
Conservation:-0.582-0.753-0.486-0.935-0.308-0.7250.575-1.000-0.165-0.2310.0241.8752.6370.382-0.5320.224
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1j1u_A_1741j1u   A176191IHMLARELLPKKVVCIHHHHHHHHSSS--EEEaaaaaaaaxabxxxbb
1mjh_A_1411mjh   A142157VTENVIKKSNKPVLVVHHHHHHHH--S-EEEEaaaaaaaaxaxpbxxb
1ny5_A_1441ny5   A151166EKIKKISCAECPVLITHHHHHHTT--S-EEEEaaaaaaaabaxxbbxb
1o97_C_371o97   C4560EAMKIKESSDTDVEVVHHHHHHHH-SS--EEEaaaaaaaaxaxxbxbb
1oi7_A_2131oi7   A217232AAAWVKDHMKKPVVGFHHHHHHHH--S-EEEEaaaaaaaaxabpbbbb
2scu_A_2132scu   A217232AAAYIKEHVTKPVVGYHHHHHHHH--S-EEEEaaaaaaaabaxwbbbb
2uag_A_942uag   A94109DIELFCREAQAPIVAIHHHHHHHH--S-EEEEaaaaaaaapabpbxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1j1u_A_1741j1u   A     TYRTYROSINE I - 176
1mjh_A_1411mjh   A     MNMANGANESE (II) ION S - 141
1mjh_A_1411mjh   A     ATPADENOSINE-5'-TRIPHOSPHATE S - 141
1mjh_A_1411mjh   A     MNMANGANESE (II) ION V - 142
1mjh_A_1411mjh   A     ATPADENOSINE-5'-TRIPHOSPHATE V - 142
1mjh_A_1411mjh   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 143
1mjh_A_1411mjh   A     ATPADENOSINE-5'-TRIPHOSPHATE E - 144
1ny5_A_1441ny5   A     ADPADENOSINE-5'-DIPHOSPHATE M - 146
1o97_C_371o97   C     FADFLAVIN-ADENINE DINUCLEOTIDE E - 37
1o97_C_371o97   C     AMPADENOSINE MONOPHOSPHATE W - 38
1o97_C_371o97   C     FADFLAVIN-ADENINE DINUCLEOTIDE W - 38
1o97_C_371o97   C     AMPADENOSINE MONOPHOSPHATE D - 39
1o97_C_371o97   C     AMPADENOSINE MONOPHOSPHATE S - 42
1o97_C_371o97   C     AMPADENOSINE MONOPHOSPHATE V - 62
1o97_C_371o97   C     AMPADENOSINE MONOPHOSPHATE S - 63
1o97_C_371o97   C     AMPADENOSINE MONOPHOSPHATE V - 64
2uag_A_942uag   A     UMAURIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE D - 94
2uag_A_942uag   A     UMAURIDINE-5'-DIPHOSPHATE-N-ACETYLMURAMOYL-L-ALANINE I - 95
2uag_A_942uag   A     KCXLYSINE NZ-CARBOXYLIC ACID T - 110
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o97_C_371o97   C FADFAD BINDING SITE FOR CHAIN DW - 38
1o97_C_371o97   C AMPAMP BINDING SITE FOR CHAIN CD - 39
1o97_C_371o97   C AMPAMP BINDING SITE FOR CHAIN CS - 63

Clusters included in this Subclass
CLUSTER: HE.4.129
CLUSTER: HE.5.144