ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.16.1

Subclass Accession number: 5659
Subclass: 4.16.1

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 7

Average sequence ID (%) : 23.4 +/- 21.3
Average RMSD (Å) : 0.843 +/- 0.310

Consensus geometry

d (Å): 11

delta (°): 90-135

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	pXGXcXXh
(φψ)-conformation:	aaeaappb

Pattern:	[CFGILW]	x	[adknqr]	[ekr]	[fqry]	[G]	[KPQRS]	[DKNS]	[LTV]	x	[ILY]	[AQT]
Conservation:	-0.870	-0.494	-0.795	-0.087	-0.390	2.805	-0.176	0.305	0.313	-0.969	0.418	-0.059

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a21_A_141	1a21	A	141	152	LRAVFGKDLNYT	HHHHHGGG-EEE	aaaaaeaaxbbb
1d5c_A_102	1d5c	A	109	120	ILNERGKDVIIA	HHHHHTTSSEEE	aaaaaeaabxbb
1gz3_A_229	1gz3	A	242	253	ITDRYGRNTLIQ	HHHHH-TT-EEE	aaaaaeaapxbx
1j93_A_278	1j93	A	281	292	GRRRLGPNVAIQ	HHHHT-SSSEEE	aaaaaeaaxxbb
1k4k_A_85	1k4k	A	92	103	WRQEQGPDVPLA	HHHHH-TTS-EE	aaaaaeaabwbb
1o0s_A_245	1o0s	A	258	269	CTKKYGQKTLIQ	HHHHH-TT-EEE	aaaaaeaapxbb
1qwg_A_209	1qwg	A	215	226	FILKFGSSVNLA	HHHHH-TT--EE	aaaaaeaaxxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1d5c_A_102	1d5c	A	MSESELENOMETHIONINE	I - 118
1d5c_A_102	1d5c	A	MSESELENOMETHIONINE	I - 119
1d5c_A_102	1d5c	A	MSESELENOMETHIONINE	A - 120
1d5c_A_102	1d5c	A	MSESELENOMETHIONINE	L - 121
1d5c_A_102	1d5c	A	MSESELENOMETHIONINE	V - 122
1d5c_A_102	1d5c	A	GDPGUANOSINE-5'-DIPHOSPHATE	N - 124
1k4k_A_85	1k4k	A	XEXENON	T - 85
1k4k_A_85	1k4k	A	XEXENON	T - 88
1k4k_A_85	1k4k	A	XEXENON	L - 89
1k4k_A_85	1k4k	A	XEXENON	F - 104

Clusters included in this Subclass

CLUSTER: HE.3.266

CLUSTER: HE.4.275

CLUSTER: HE.5.401

CLUSTER: HE.5.402