ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.21.1

Subclass Accession number: 5666
Subclass: 4.21.1

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 10

Average sequence ID (%) : 15.0 +/- 28.6
Average RMSD (Å) : 0.780 +/- 0.204

Consensus geometry

d (Å): 15

delta (°): 90-135

theta (°): 45-90

rho (°): 135-180

Consensus Sequence:	pXXXXXhX
(φψ)-conformation:	aalbbabb

Pattern:	x	[dkqry]	x	x	[ehkr]	[ait]	x	x	[kps]	[DEGPST]	[FHLWY]	[aitv]
Conservation:	-0.467	-1.174	-0.829	-0.797	0.635	0.612	-1.152	-0.176	1.321	0.103	2.043	-0.121

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a1h_A_119	1a1h	A	125	136	HIRIHTGQKPFQ	HHHHHH----EE	aaaaaavxbabb
1fs7_A_248	1fs7	A	253	264	AYYDEINFADWT	HHHHHTT--SEE	aaaaaalxbabx
1gu6_A_235	1gu6	A	240	251	QYYDKIAFSDWT	HHHHHTT--SEE	aaaaaalxbabb
1j9q_A_203	1j9q	A	207	218	VKVMRTLTPTHV	HHHHTTT--SEE	aaaaaalbxabb
1kbv_A_190	1kbv	A	190	201	MDKAVAEQPEYV	HHHHHHT--SEE	aaaaaavbxabb
1llm_C_116	1llm	C	122	133	HIRTHTGEKPFA	HHHHHH----EE	aaaaaavxbabx
1nif_*_199	1nif	-	207	218	VKAMRTLTPTHI	HHHHTT---SEE	aaaaaavbxabb
1oe1_A_197	1oe1	A	201	212	VQVMRTLTPSHI	HHHHHTT--SEE	aaaaaavbxabb
1p2f_A_104	1p2f	A	112	123	KRFLEREKKGLY	HHHHHH---SEE	aaaaaalbbabb
1qdb_A_253	1qdb	A	258	269	KYYDEINFSDWT	HHHHHTT--SEE	aaaaaalbbabb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a1h_A_119	1a1h	A	ZNZINC ION	H - 125
1a1h_A_119	1a1h	A	ZNZINC ION	I - 126
1a1h_A_119	1a1h	A	ZNZINC ION	H - 129
1fs7_A_248	1fs7	A	CACALCIUM ION	Y - 255
1fs7_A_248	1fs7	A	CACALCIUM ION	D - 262
1gu6_A_235	1gu6	A	GOLGLYCEROL	V - 235
1gu6_A_235	1gu6	A	GOLGLYCEROL	E - 236
1gu6_A_235	1gu6	A	GOLGLYCEROL	M - 238
1gu6_A_235	1gu6	A	CACALCIUM ION	Y - 242
1gu6_A_235	1gu6	A	CACALCIUM ION	D - 249
1llm_C_116	1llm	C	ZNZINC ION	L - 119
1llm_C_116	1llm	C	ZNZINC ION	H - 122
1llm_C_116	1llm	C	ZNZINC ION	I - 123
1llm_C_116	1llm	C	ZNZINC ION	T - 125
1llm_C_116	1llm	C	ZNZINC ION	H - 126
1qdb_A_253	1qdb	A	CACALCIUM ION	Y - 260
1qdb_A_253	1qdb	A	CACALCIUM ION	D - 267

Clusters included in this Subclass

CLUSTER: HE.3.136

CLUSTER: HE.4.153

CLUSTER: HE.5.114