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Information on SUBCLASS 4.39.2
Subclass Accession number: 5696
Subclass: 4.39.2 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 3.6 +/- 7.0
Average RMSD (Å) : 1.100 +/- 0.216

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: hXXXXcXp
(φψ)-conformation: aapbplbb
Pattern: [ANV]xxxxx[ADNV][DGK]x[ADNR]xxxx
Conservation:0.695-1.213-0.9481.701-1.213-0.021-0.5511.9430.3760.376-0.419-0.286-0.9480.509
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1im8_A_491im8   A4962AERFVTADSNVYDLHHHH--TT-EEEEEaaaaxxplbbbbbx
1isp_A_1381isp   A138151NYLSRLDGARNVQIHHHH--BTSEEEEEaaaaxbxgxxxbxb
1o97_D_491o97   D4962VPALSVNGVDELVVHHHH-BTT-SEEEEaaaaxbpvbabbbx
1pie_A_1821pie   A186199AIGFGEVKKAIELDHHHH-BTTEEEEEEaaaapbplbbbxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1im8_A_491im8   A     MSESELENOMETHIONINE A - 49
1im8_A_491im8   A     MSESELENOMETHIONINE E - 50
1im8_A_491im8   A     MSESELENOMETHIONINE R - 51
1im8_A_491im8   A     MSESELENOMETHIONINE F - 52
1im8_A_491im8   A     MSESELENOMETHIONINE V - 53
1im8_A_491im8   A     MSESELENOMETHIONINE S - 57
1im8_A_491im8   A     MSESELENOMETHIONINE N - 58
1im8_A_491im8   A     MSESELENOMETHIONINE V - 59
1im8_A_491im8   A     MSESELENOMETHIONINE Y - 60
1im8_A_491im8   A     MSESELENOMETHIONINE D - 61
1im8_A_491im8   A     SAIS-ADENOSYL-L-HOMOSELENOCYSTEINE D - 61
1im8_A_491im8   A     SAIS-ADENOSYL-L-HOMOSELENOCYSTEINE L - 62
1pie_A_1821pie   A     GALD-GALACTOSE L - 182
1pie_A_1821pie   A     GALD-GALACTOSE D - 183
1pie_A_1821pie   A     PO4PHOSPHATE ION D - 183
1pie_A_1821pie   A     GALD-GALACTOSE Q - 184

Clusters included in this Subclass
CLUSTER: HE.5.196