Information on SUBCLASS 4.39.2 |
Subclass Accession number: 5696
Subclass: 4.39.2 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 3.6 +/- 7.0 Average RMSD (Å) : 1.100 +/- 0.216 Consensus geometry
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Consensus Sequence: | hXXXXcXp |
(φψ)-conformation: | aapbplbb |
Pattern: | [ANV] | x | x | x | x | x | [ADNV] | [DGK] | x | [ADNR] | x | x | x | x |
Conservation: | 0.695 | -1.213 | -0.948 | 1.701 | -1.213 | -0.021 | -0.551 | 1.943 | 0.376 | 0.376 | -0.419 | -0.286 | -0.948 | 0.509 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1im8_A_49 | 1im8 | A | 49 | 62 | AERFVTADSNVYDL | HHHH--TT-EEEEE | aaaaxxplbbbbbx |
1isp_A_138 | 1isp | A | 138 | 151 | NYLSRLDGARNVQI | HHHH--BTSEEEEE | aaaaxbxgxxxbxb |
1o97_D_49 | 1o97 | D | 49 | 62 | VPALSVNGVDELVV | HHHH-BTT-SEEEE | aaaaxbpvbabbbx |
1pie_A_182 | 1pie | A | 186 | 199 | AIGFGEVKKAIELD | HHHH-BTTEEEEEE | aaaapbplbbbxbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1im8_A_49 | 1im8 | A | MSESELENOMETHIONINE | A - 49 |
1im8_A_49 | 1im8 | A | MSESELENOMETHIONINE | E - 50 |
1im8_A_49 | 1im8 | A | MSESELENOMETHIONINE | R - 51 |
1im8_A_49 | 1im8 | A | MSESELENOMETHIONINE | F - 52 |
1im8_A_49 | 1im8 | A | MSESELENOMETHIONINE | V - 53 |
1im8_A_49 | 1im8 | A | MSESELENOMETHIONINE | S - 57 |
1im8_A_49 | 1im8 | A | MSESELENOMETHIONINE | N - 58 |
1im8_A_49 | 1im8 | A | MSESELENOMETHIONINE | V - 59 |
1im8_A_49 | 1im8 | A | MSESELENOMETHIONINE | Y - 60 |
1im8_A_49 | 1im8 | A | MSESELENOMETHIONINE | D - 61 |
1im8_A_49 | 1im8 | A | SAIS-ADENOSYL-L-HOMOSELENOCYSTEINE | D - 61 |
1im8_A_49 | 1im8 | A | SAIS-ADENOSYL-L-HOMOSELENOCYSTEINE | L - 62 |
1pie_A_182 | 1pie | A | GALD-GALACTOSE | L - 182 |
1pie_A_182 | 1pie | A | GALD-GALACTOSE | D - 183 |
1pie_A_182 | 1pie | A | PO4PHOSPHATE ION | D - 183 |
1pie_A_182 | 1pie | A | GALD-GALACTOSE | Q - 184 |
Clusters included in this Subclass |
CLUSTER: HE.5.196 |