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Information on SUBCLASS 5.3.1
Subclass Accession number: 5753
Subclass: 5.3.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 22

Average sequence ID (%) : 17.0 +/- 16.3
Average RMSD (Å) : 0.982 +/- 0.252

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXGhXhpXh
(φψ)-conformation: aalbbpabb
Pattern: x[acilmvwy]xx[aefkl][GNQS][afgivy]x[afipvy][dehktw]xxx
Conservation:-0.526-0.052-0.507-0.432-0.3443.153-0.400-0.2600.2200.437-0.730-0.450-0.110
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8h_*_761a8h   -8193AWDLLGIAYDDFIHHHHTT---SEEEaaaaavxbxabbx
1b7y_B_181b7y   B2436RLAGLGFETDRIEHHHHHT----EEEaaaaagbxxabbb
1eg7_A_13171eg7   A13171329KCRYAGFKPDATVHHHHHT----EEEaaaaavxbpabbb
1euc_B_2731euc   B282294IIFLNGGKPANFLHHHHTT--BSEEEaaaaavbbxabbb
1f2d_A_1741f2d   A185197QEVELGIKFDKIVHHHHHT---SEEEaaaaavbbxabbb
1f6d_A_441f6d   A4657VLKLFSIVPDYD.HHHHTT---SEE.aaaaalbbpabb.
1f7u_A_2601f7u   A280292TYARLNIKYDVYSHHHHTT---SEEEaaaaalbbxabbx
1gud_A_961gud   A98110NLKKAGGNVEAFVHHHHTT---SEEEaaaaavbbbabbb
1ihu_A_5011ihu   A513525DLERAGIHPWGWIHHHHTT----EEEaaaaavbbpabbb
1iq0_A_2131iq0   A226238TMHALNARYDLLVHHHHTT---SEEEaaaaavxbbabbb
1jye_A_1921jye   A204216YLTRNQIQPIAERHHHHTT---SEEEaaaaalbbxabbb
1jye_A_2221jye   A231243QMLNEGIVPTAMLHHHHTT---SEEEaaaaavxbxabbb
1jyh_A_221jyh   A3648WVDSKNIVPKEWVHHHHTT---SEEEaaaaalxbxabbb
1k1x_A_951k1x   A108120YARKLGYDAKGVWHHHHTT----EEEaaaaavbxpabbx
1l5x_A_701l5x   A7789ATFGLGRKYDIVLHHHHHTS--SEEEaaaaavbxxabbb
1lh0_A_10431lh0   A10561068ALVDSGIEFDLLFHHHHH----SEEEaaaaavxxbabbb
1qba_*_5071qba   -523535MHKEAGQPIKTWHHHHHHT---S-EEaaaaavbppabbb
1qop_B_2071qop   B216228ILDKEGRLPDAVIHHHHHSS--SEEEaaaaavbxxabbb
1s3x_A_1161s3x   A131143AEAYLGYPVTNAVHHHHHSS---EEEaaaaavbxxabbb
1v4v_A_451v4v   A5162ALSLFGIQEDRN.HHHTTT---SEE.aaaaavbbxabb.
1v7c_A_1661v7c   A171183VVDELGDAPHYHAHHHHHSS--SEEEaaaaavbxxabbb
2dkb_*_2572dkb   -257269ACQRDGVTPDILTHHHHHT---SEEEaaaaavbxxabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1euc_B_2731euc   B     PO4PHOSPHATE ION A - 273
1euc_B_2731euc   B     PO4PHOSPHATE ION G - 274
1euc_B_2731euc   B     PO4PHOSPHATE ION L - 275
1euc_B_2731euc   B     PO4PHOSPHATE ION A - 276
1euc_B_2731euc   B     ZNZINC ION A - 276
1euc_B_2731euc   B     ZNZINC ION M - 277
1euc_B_2731euc   B     ZNZINC ION T - 279
1euc_B_2731euc   B     ZNZINC ION C - 280
1euc_B_2731euc   B     ZNZINC ION D - 281
1euc_B_2731euc   B     ZNZINC ION I - 283
1euc_B_2731euc   B     ZNZINC ION P - 290
1euc_B_2731euc   B     ZNZINC ION N - 292
1euc_B_2731euc   B     ZNZINC ION F - 293
1euc_B_2731euc   B     ZNZINC ION L - 294
1euc_B_2731euc   B     PO4PHOSPHATE ION D - 295
1f2d_A_1741f2d   A     PLPPYRIDOXAL-5'-PHOSPHATE C - 199
1f2d_A_1741f2d   A     PLPPYRIDOXAL-5'-PHOSPHATE C - 200
1f6d_A_441f6d   A     MSESELENOMETHIONINE D - 44
1f6d_A_441f6d   A     MSESELENOMETHIONINE Q - 45
1f6d_A_441f6d   A     MSESELENOMETHIONINE V - 46
1f6d_A_441f6d   A     MSESELENOMETHIONINE I - 52
1ihu_A_5011ihu   A     ADPADENOSINE-5'-DIPHOSPHATE T - 501
1ihu_A_5011ihu   A     MGMAGNESIUM ION T - 502
1ihu_A_5011ihu   A     ADPADENOSINE-5'-DIPHOSPHATE T - 502
1ihu_A_5011ihu   A     ADPADENOSINE-5'-DIPHOSPHATE P - 503
1ihu_A_5011ihu   A     ADPADENOSINE-5'-DIPHOSPHATE N - 527
1ihu_A_5011ihu   A     ADPADENOSINE-5'-DIPHOSPHATE N - 528
1ihu_A_5011ihu   A     ADPADENOSINE-5'-DIPHOSPHATE S - 529
1jye_A_1921jye   A     GOLGLYCEROL S - 193
1jye_A_1921jye   A     GOLGLYCEROL R - 197
1l5x_A_701l5x   A     MSESELENOMETHIONINE L - 76
1l5x_A_701l5x   A     GOLGLYCEROL L - 76
1l5x_A_701l5x   A     MSESELENOMETHIONINE A - 77
1l5x_A_701l5x   A     GOLGLYCEROL A - 77
1l5x_A_701l5x   A     GOLGLYCEROL T - 78
1l5x_A_701l5x   A     MSESELENOMETHIONINE F - 79
1l5x_A_701l5x   A     MSESELENOMETHIONINE G - 80
1l5x_A_701l5x   A     GOLGLYCEROL G - 80
1l5x_A_701l5x   A     GOLGLYCEROL L - 81
1l5x_A_701l5x   A     GOLGLYCEROL Y - 85
1l5x_A_701l5x   A     MSESELENOMETHIONINE D - 86
1l5x_A_701l5x   A     MSESELENOMETHIONINE I - 92
1qop_B_2071qop   B     PLPPYRIDOXAL-5'-PHOSPHATE C - 230
1v4v_A_451v4v   A     MSESELENOMETHIONINE I - 57
1v4v_A_451v4v   A     MSESELENOMETHIONINE D - 60
1v4v_A_451v4v   A     MSESELENOMETHIONINE R - 61
1v7c_A_1661v7c   A     HEY(2E)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL] PYRIDIN-4-YL}METHYL)AMINO]-5-PHOSPHONOPENT-2-ENOIC ACID P - 185
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1qop_B_2071qop   B PLPPLP BINDING SITE FOR CHAIN BC - 230

Clusters included in this Subclass
CLUSTER: HE.4.301
CLUSTER: HE.5.113
CLUSTER: HE.5.94
CLUSTER: HE.6.23
CLUSTER: HE.6.232
CLUSTER: HE.7.138
CLUSTER: HE.7.142
CLUSTER: HE.7.76