Information on SUBCLASS 5.3.2 |
Subclass Accession number: 5754
Subclass: 5.3.2 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 14 Average sequence ID (%) : 16.7 +/- 16.9 Average RMSD (Å) : 1.036 +/- 0.284 Consensus geometry
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Consensus Sequence: | pXcXphcXh |
(φψ)-conformation: | aalbbpabb |
Pattern: | x | x | x | x | [ADEKNQRT] | [ailmvw] | [aelm] | [aekt] | [ADEKST] | x | [DGKNS] | x | [dknprst] | [FILMPVY] | [DEKNQT] | x | [ACILVW] | [gilvy] |
Conservation: | -1.063 | -0.586 | 0.004 | -1.256 | 0.398 | 0.212 | 0.330 | 0.127 | 1.092 | -0.817 | 1.549 | -1.039 | -0.680 | 0.574 | 2.235 | -0.963 | 0.825 | -0.941 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ak2_*_106 | 1ak2 | - | 110 | 127 | EMLDDLMEKRKEKLDSVI | HHHHHHHHHHT----EEE | aaaaaaaaaavbbxabbx |
1d4d_A_215 | 1d4d | A | 216 | 233 | SDSIDWLTSMGADMTDVG | HHHHHHHHHHT----EEE | aaaaaaaaaagxbbaxbb |
1e4y_A_90 | 1e4y | A | 90 | 107 | IPQADAMKEAGINVDYVL | HHHHHHHHHHT---SEEE | aaaaaaaaaavbbbabbb |
1e58_A_31 | 1e58 | A | 38 | 55 | KAAGKLLKEEGYSFDFAY | HHHHHHHHHTT---SEEE | aaaaaaaaaavxbbabbb |
1f2d_A_174 | 1f2d | A | 180 | 197 | DEVINQEVELGIKFDKIV | HHHHHHHHHHT---SEEE | aaaaaaaaaavbbxabbb |
1iq0_A_213 | 1iq0 | A | 221 | 238 | LAQMATMHALNARYDLLV | HHHHHHHHHTT---SEEE | aaaaaaaaaavxbbabbb |
1mhm_A_96 | 1mhm | A | 97 | 114 | PPILRLAETLSLKVQDVR | HHHHHHHHHTT----EEE | aaaaaaaaaavbbxabbb |
1p3j_A_90 | 1p3j | A | 94 | 111 | EALEEILEEYGKPIDYVI | HHHHHHHHHHT----EEE | aaaaaaaaaavbxxabbx |
1qba_*_507 | 1qba | - | 518 | 535 | GEIAQMHKEAGQPIKTWH | HHHHHHHHHHT---S-EE | aaaaaaaaaavbppabbb |
1qhf_A_29 | 1qhf | A | 36 | 53 | ARAGELLKEKKVYPDVLY | HHHHHHHHHTT---SEEE | aaaaaaaaaalbbxabbb |
1ryb_A_23 | 1ryb | A | 26 | 43 | EMVDRIAAEEGITMNTIQ | HHHHHHHHHTT----EEE | aaaaaaaaaavbbxabbb |
1s3g_A_90 | 1s3g | A | 94 | 111 | EALDQLLADMGRKIEHVL | HHHHHHHHHTT----EEE | aaaaaaaaaavbbxabbx |
1vgy_A_143 | 1vgy | A | 144 | 161 | TKVVDVLKARDELIDYCI | HHHHHHHHHTT---SEEE | aaaaaaaaaalxxbabbb |
1zin_*_90 | 1zin | - | 94 | 111 | EALETMLADIGRKLDYVI | HHHHHHHHHTT----EEE | aaaaaaaaaavbbxabbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1e4y_A_90 | 1e4y | A | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | Q - 92 |
1e4y_A_90 | 1e4y | A | AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE | F - 109 |
1f2d_A_174 | 1f2d | A | PLPPYRIDOXAL-5'-PHOSPHATE | C - 199 |
1f2d_A_174 | 1f2d | A | PLPPYRIDOXAL-5'-PHOSPHATE | C - 200 |
1qhf_A_29 | 1qhf | A | 3PG3-PHOSPHOGLYCERIC ACID | E - 34 |
1vgy_A_143 | 1vgy | A | MSESELENOMETHIONINE | K - 145 |
1vgy_A_143 | 1vgy | A | MSESELENOMETHIONINE | V - 146 |
1vgy_A_143 | 1vgy | A | MSESELENOMETHIONINE | V - 147 |
1vgy_A_143 | 1vgy | A | MSESELENOMETHIONINE | V - 149 |
1vgy_A_143 | 1vgy | A | MSESELENOMETHIONINE | L - 150 |
1vgy_A_143 | 1vgy | A | MSESELENOMETHIONINE | K - 151 |
1vgy_A_143 | 1vgy | A | MSESELENOMETHIONINE | R - 153 |
1vgy_A_143 | 1vgy | A | MSESELENOMETHIONINE | E - 155 |
1vgy_A_143 | 1vgy | A | MSESELENOMETHIONINE | L - 156 |
1vgy_A_143 | 1vgy | A | MSESELENOMETHIONINE | I - 157 |
1vgy_A_143 | 1vgy | A | MSESELENOMETHIONINE | D - 158 |
1vgy_A_143 | 1vgy | A | MSESELENOMETHIONINE | V - 162 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1e4y_A_90 | 1e4y | A | AC1AP5 BINDING SITE FOR CHAIN A | Q - 92 |
Clusters included in this Subclass |
CLUSTER: HE.4.266 |
CLUSTER: HE.5.233 |
CLUSTER: HE.5.64 |
CLUSTER: HE.6.31 |
CLUSTER: HE.7.39 |