Logo
Information on SUBCLASS 5.3.2
Subclass Accession number: 5754
Subclass: 5.3.2 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 16.7 +/- 16.9
Average RMSD (Å) : 1.036 +/- 0.284

Consensus geometry
d (Å): 17 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: pXcXphcXh
(φψ)-conformation: aalbbpabb
Pattern: xxxx[ADEKNQRT][ailmvw][aelm][aekt][ADEKST]x[DGKNS]x[dknprst][FILMPVY][DEKNQT]x[ACILVW][gilvy]
Conservation:-1.063-0.5860.004-1.2560.3980.2120.3300.1271.092-0.8171.549-1.039-0.6800.5742.235-0.9630.825-0.941
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ak2_*_1061ak2   -110127EMLDDLMEKRKEKLDSVIHHHHHHHHHHT----EEEaaaaaaaaaavbbxabbx
1d4d_A_2151d4d   A216233SDSIDWLTSMGADMTDVGHHHHHHHHHHT----EEEaaaaaaaaaagxbbaxbb
1e4y_A_901e4y   A90107IPQADAMKEAGINVDYVLHHHHHHHHHHT---SEEEaaaaaaaaaavbbbabbb
1e58_A_311e58   A3855KAAGKLLKEEGYSFDFAYHHHHHHHHHTT---SEEEaaaaaaaaaavxbbabbb
1f2d_A_1741f2d   A180197DEVINQEVELGIKFDKIVHHHHHHHHHHT---SEEEaaaaaaaaaavbbxabbb
1iq0_A_2131iq0   A221238LAQMATMHALNARYDLLVHHHHHHHHHTT---SEEEaaaaaaaaaavxbbabbb
1mhm_A_961mhm   A97114PPILRLAETLSLKVQDVRHHHHHHHHHTT----EEEaaaaaaaaaavbbxabbb
1p3j_A_901p3j   A94111EALEEILEEYGKPIDYVIHHHHHHHHHHT----EEEaaaaaaaaaavbxxabbx
1qba_*_5071qba   -518535GEIAQMHKEAGQPIKTWHHHHHHHHHHHT---S-EEaaaaaaaaaavbppabbb
1qhf_A_291qhf   A3653ARAGELLKEKKVYPDVLYHHHHHHHHHTT---SEEEaaaaaaaaaalbbxabbb
1ryb_A_231ryb   A2643EMVDRIAAEEGITMNTIQHHHHHHHHHTT----EEEaaaaaaaaaavbbxabbb
1s3g_A_901s3g   A94111EALDQLLADMGRKIEHVLHHHHHHHHHTT----EEEaaaaaaaaaavbbxabbx
1vgy_A_1431vgy   A144161TKVVDVLKARDELIDYCIHHHHHHHHHTT---SEEEaaaaaaaaaalxxbabbb
1zin_*_901zin   -94111EALETMLADIGRKLDYVIHHHHHHHHHTT----EEEaaaaaaaaaavbbxabbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e4y_A_901e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE Q - 92
1e4y_A_901e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE F - 109
1f2d_A_1741f2d   A     PLPPYRIDOXAL-5'-PHOSPHATE C - 199
1f2d_A_1741f2d   A     PLPPYRIDOXAL-5'-PHOSPHATE C - 200
1qhf_A_291qhf   A     3PG3-PHOSPHOGLYCERIC ACID E - 34
1vgy_A_1431vgy   A     MSESELENOMETHIONINE K - 145
1vgy_A_1431vgy   A     MSESELENOMETHIONINE V - 146
1vgy_A_1431vgy   A     MSESELENOMETHIONINE V - 147
1vgy_A_1431vgy   A     MSESELENOMETHIONINE V - 149
1vgy_A_1431vgy   A     MSESELENOMETHIONINE L - 150
1vgy_A_1431vgy   A     MSESELENOMETHIONINE K - 151
1vgy_A_1431vgy   A     MSESELENOMETHIONINE R - 153
1vgy_A_1431vgy   A     MSESELENOMETHIONINE E - 155
1vgy_A_1431vgy   A     MSESELENOMETHIONINE L - 156
1vgy_A_1431vgy   A     MSESELENOMETHIONINE I - 157
1vgy_A_1431vgy   A     MSESELENOMETHIONINE D - 158
1vgy_A_1431vgy   A     MSESELENOMETHIONINE V - 162
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e4y_A_901e4y   A AC1AP5 BINDING SITE FOR CHAIN AQ - 92

Clusters included in this Subclass
CLUSTER: HE.4.266
CLUSTER: HE.5.233
CLUSTER: HE.5.64
CLUSTER: HE.6.31
CLUSTER: HE.7.39