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Information on SUBCLASS 5.5.2
Subclass Accession number: 5759
Subclass: 5.5.2 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 20.0 +/- 18.6
Average RMSD (Å) : 0.667 +/- 0.207

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: pXhXpGpXh
(φψ)-conformation: aapppgpbb
Pattern: [AL][ikmv][AENT]x[ACILTV][HKNS]x[AI][kpq][AENS][GK][ADEQS][iltv][ILV][LTV]
Conservation:0.300-0.790-0.167-1.516-0.5590.277-1.3070.462-0.5050.2202.196-0.082-0.5511.7750.246
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ibj_A_1571ibj   A161175LSAVTHLIKNGEEIVHHHHHTTS-TT-EEEaaaaaaaxxpvxbbb
1ooy_A_71ooy   A721AVEAVKDIPNGATVLHHHHHTT--TT-EEEaaaaaaaxxpvxxbx
1poi_B_91poi   B1428AVTIAKQIKNGQVVTHHHHHTT--TT-EEEaaaaaaaxxxvxxbx
1qis_A_1701qis   A173187LINSLNEAQAGDVVLHHHHHTT--TT-EEEaaaaaaaxxxgxxbx
1rwz_A_1951rwz   A198212LKEFCKVAGSGDLLTHHHHGGG--TT-EEEaaaaaaabbpvxxbb
7aat_A_1707aat   A173187AMEDISKIPEKSIILHHHHHTTS-TT-EEEaaaaaaaxppvxbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ibj_A_1571ibj   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 157
1ibj_A_1571ibj   A     PLPPYRIDOXAL-5'-PHOSPHATE M - 158
1ibj_A_1571ibj   A     PLPPYRIDOXAL-5'-PHOSPHATE A - 159
1ibj_A_1571ibj   A     PLPPYRIDOXAL-5'-PHOSPHATE L - 161
1qis_A_1701qis   A     PLPPYRIDOXAL-5'-PHOSPHATE H - 189

Clusters included in this Subclass
CLUSTER: HE.6.287
CLUSTER: HE.7.98
CLUSTER: HE.8.38