ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.11.1

Subclass Accession number: 5775
Subclass: 5.11.1

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 10

Average sequence ID (%) : 43.3 +/- 32.7
Average RMSD (Å) : 0.640 +/- 0.276

Consensus geometry

d (Å): 19

delta (°): 45-90

theta (°): 0-45

rho (°): 135-180

Consensus Sequence:	LpXpXXPph
(φψ)-conformation:	aapbbppbb

Pattern:	[KNPR]	[adeq]	[hnrt]	[HL]	x	[rw]	[AKQT]	[dep]	[kps]	[NP]	[eks]	[ALMT]	[hrw]	[ILMV]
Conservation:	0.231	-1.060	-1.057	0.496	0.400	-0.835	-0.180	-0.446	-0.069	2.669	-0.748	-0.380	-0.239	1.217

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1agd_A_176	1agd	A	176	189	KDTLERADPPKTHV	HHHHT--B--EEEE	aaaaabxbxxxbbb
1i4f_A_176	1i4f	A	176	189	KETLQRTDAPKTHM	HHHHT--B--EEEE	aaaaabxbxxxbbb
1k8d_A_176	1k8d	A	176	189	KETLLRTDPPKAHV	HHHHT-----EEEE	aaaaaxbpwxbbbb
1lk2_A_176	1lk2	A	176	189	NATLLRTDSPKAHV	HHHHT--B--EEEE	aaaaaxbbxxbbbb
1m6o_A_176	1m6o	A	176	189	KETLQRADPPKTHV	HHHHT--B--EEEE	aaaaabbbwxxbbb
1mhc_A_176	1mhc	A	176	189	KEILQRADPPKAHV	HHHHS--B--EEEE	aaaaabbxxxxbbb
1ofh_A_42	1ofh	A	43	56	PLRHEVTPKNILMI	HHHHH-----EEEE	aaaaaxbxbxbbbx
1onq_A_178	1onq	A	178	191	KAHLQRQVKPEAWL	HHHHT--B--EEEE	aaaaaxbbxxbbbb
1qo3_A_176	1qo3	A	176	189	NATLLRTDPPKAHV	HHHHT--B--EEEE	aaaaaxbxxxxbbb
3fru_A_173	3fru	A	173	186	RQNLEWKEPPSMRL	HHHHT--B--EEEE	aaaaapbbxxxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1lk2_A_176	1lk2	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 176
1lk2_A_176	1lk2	A	FUCFUCOSE	N - 176
1lk2_A_176	1lk2	A	NAGN-ACETYL-D-GLUCOSAMINE	A - 177
1lk2_A_176	1lk2	A	FUCFUCOSE	A - 177
1lk2_A_176	1lk2	A	MPD2-METHYL-2,4-PENTANEDIOL	H - 188
1qo3_A_176	1qo3	A	EDO1,2-ETHANEDIOL	H - 188
1qo3_A_176	1qo3	A	EDO1,2-ETHANEDIOL	T - 190

Clusters included in this Subclass

CLUSTER: HE.5.121

CLUSTER: HE.6.151

CLUSTER: HE.7.13