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Information on SUBCLASS 5.18.1
Subclass Accession number: 5790
Subclass: 5.18.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 12.9 +/- 14.3
Average RMSD (Å) : 0.667 +/- 0.175

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: pXXhpXXXh
(φψ)-conformation: aalpappbb
Pattern: [afil][AGIKT][hkrt][almt][ACKLT]x[ekmq]x[EGR][alv][KNR][GNTV][EPR]x[agilv]
Conservation:-0.476-1.258-0.375-0.403-0.734-0.3570.552-0.2601.6550.2772.188-0.2561.142-0.377-1.317
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e5m_A_1451e5m   A147161SGLTAINLGAKGPNNHHHHHHHHT--S-EEaaaaaaaavxaxpbb
1euc_B_3341euc   B339353ITKACRELELKVPLVHHHHHHHHT--S-EEaaaaaaaalxaxxbb
1gxj_A_6231gxj   A626640AIRMKKKYRLNTRIAHHHHHHHHT--S-EEaaaaaaaalxabxbb
1kas_*_1411kas   -143157AGHLTIMYGLRGPSIHHHHHHHHT--S-EEaaaaaaaavxaxpbb
1ono_A_591ono   A6579LKTMLQQQGSRTEVLHHHHHHHHT---EEEaaaaaaaavbapxxb
1uqt_A_1361uqt   A136150FAHELRKRGVNNRIGHHHHHHHTT--S-EEaaaaaaaavxaxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1euc_B_3341euc   B     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE I - 334
1euc_B_3341euc   B     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE I - 335
1euc_B_3341euc   B     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE A - 336
1euc_B_3341euc   B     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE N - 337
1euc_B_3341euc   B     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE L - 356
1euc_B_3341euc   B     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE E - 357
1uqt_A_1361uqt   A     U2FURIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GALACTOSE F - 152

Clusters included in this Subclass
CLUSTER: HE.4.185
CLUSTER: HE.5.224