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Information on SUBCLASS 5.25.1
Subclass Accession number: 5801
Subclass: 5.25.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 19.6 +/- 28.9
Average RMSD (Å) : 1.125 +/- 0.320

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: XXXDhpXph
(φψ)-conformation: aabpaapbb
Pattern: [HIL][ACN][ek][AVY][AL][GQT][fr][CMW][ekl][KST]xx[KNT][AEGQ][AFT][FKV][D][AP][ENST][FHL][KQR][CFI]x
Conservation:-0.374-0.360-0.332-0.2440.390-0.567-0.8400.349-0.9340.180-0.282-0.6790.226-0.516-0.491-0.8823.8710.5930.006-0.2891.0160.160-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1apa_*_181apa   -1839INKYATFMKSIHNQAKDPTLKC.HHHHHHHHHHHHHHHS-SS-EE.aaaaaaaaaaaaaaaxxaaxbb.
1j1q_A_131j1q   A1334INKYATFMESLRNEAKDPSLKC.HHHHHHHHHHHHHHHS-SS-EE.aaaaaaaaaaaaaaaxxaaxbb.
1nw1_A_1931nw1   A194216LCEALQRWLKQLTGTVDAEHRFDHHHHHHHHHHHHHHHS-TT--EEaaaaaaaaaaaaaaabpaaxbxx
1qhb_A_4841qhb   A485506HAVVAGACVTILKAFFDANFQI.HHHHHHHHHHHHHHHBTTT-EE.aaaaaaaaaaaaaaabxaapxb.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1qhb_A_4841qhb   A     PO4PHOSPHATE ION G - 484
1qhb_A_4841qhb   A     PO4PHOSPHATE ION H - 485
1qhb_A_4841qhb   A     PO4PHOSPHATE ION A - 486
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1qhb_A_4841qhb   A VAAVANADATE BINDING SITE IN SUBUNIT AG - 484
1qhb_A_4841qhb   A VAAVANADATE BINDING SITE IN SUBUNIT AH - 485

Clusters included in this Subclass
CLUSTER: HE.5.241