Information on SUBCLASS 5.25.1 |
Subclass Accession number: 5801
Subclass: 5.25.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 19.6 +/- 28.9 Average RMSD (Å) : 1.125 +/- 0.320 Consensus geometry
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Consensus Sequence: | XXXDhpXph |
(φψ)-conformation: | aabpaapbb |
Pattern: | [HIL] | [ACN] | [ek] | [AVY] | [AL] | [GQT] | [fr] | [CMW] | [ekl] | [KST] | x | x | [KNT] | [AEGQ] | [AFT] | [FKV] | [D] | [AP] | [ENST] | [FHL] | [KQR] | [CFI] | x |
Conservation: | -0.374 | -0.360 | -0.332 | -0.244 | 0.390 | -0.567 | -0.840 | 0.349 | -0.934 | 0.180 | -0.282 | -0.679 | 0.226 | -0.516 | -0.491 | -0.882 | 3.871 | 0.593 | 0.006 | -0.289 | 1.016 | 0.160 | -1.000 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1apa_*_18 | 1apa | - | 18 | 39 | INKYATFMKSIHNQAKDPTLKC. | HHHHHHHHHHHHHHHS-SS-EE. | aaaaaaaaaaaaaaaxxaaxbb. |
1j1q_A_13 | 1j1q | A | 13 | 34 | INKYATFMESLRNEAKDPSLKC. | HHHHHHHHHHHHHHHS-SS-EE. | aaaaaaaaaaaaaaaxxaaxbb. |
1nw1_A_193 | 1nw1 | A | 194 | 216 | LCEALQRWLKQLTGTVDAEHRFD | HHHHHHHHHHHHHHHS-TT--EE | aaaaaaaaaaaaaaabpaaxbxx |
1qhb_A_484 | 1qhb | A | 485 | 506 | HAVVAGACVTILKAFFDANFQI. | HHHHHHHHHHHHHHHBTTT-EE. | aaaaaaaaaaaaaaabxaapxb. |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1qhb_A_484 | 1qhb | A | PO4PHOSPHATE ION | G - 484 |
1qhb_A_484 | 1qhb | A | PO4PHOSPHATE ION | H - 485 |
1qhb_A_484 | 1qhb | A | PO4PHOSPHATE ION | A - 486 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1qhb_A_484 | 1qhb | A | VAAVANADATE BINDING SITE IN SUBUNIT A | G - 484 |
1qhb_A_484 | 1qhb | A | VAAVANADATE BINDING SITE IN SUBUNIT A | H - 485 |
Clusters included in this Subclass |
CLUSTER: HE.5.241 |