Information on SUBCLASS 5.34.1 |
Subclass Accession number: 5813
Subclass: 5.34.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 12.2 +/- 13.0 Average RMSD (Å) : 0.700 +/- 0.354 Consensus geometry
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Consensus Sequence: | pppXXhpXh |
(φψ)-conformation: | aapaababb |
Pattern: | [AGV] | [emqr] | [kpq] | [HILY] | [agsv] | [klmt] | x | [LMT] | [kns] | [AENS] | [DHS] | [DPS] | x | [LTV] | [DHKPS] | x | [FLV] | [ltvy] |
Conservation: | -0.185 | -0.541 | -0.441 | -0.017 | -0.930 | -0.597 | -1.208 | 1.442 | -0.380 | 0.454 | 0.970 | 1.963 | -0.328 | 1.381 | -0.597 | -1.319 | 1.264 | -0.930 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a4i_A_78 | 1a4i | A | 81 | 98 | VMKYITSLNEDSTVHGFL | HHHHHHHHHH-TT--EEE | aaaaaaaaaaxaaxabbb |
1d2n_A_520 | 1d2n | A | 529 | 546 | GELLVQQTKNSDRTPLVS | HHHHHHHHHH-SS-SEEE | aaaaaaaaaaxaababbb |
1g64_B_298 | 1g64 | B | 308 | 325 | VWQHGKRMLADPLLDMVV | HHHHHHHHHH-TT-SEEE | aaaaaaaaaaxaaxabbb |
1ibj_A_328 | 1ibj | A | 339 | 356 | ARKIAMYLSSHPRVKKVY | HHHHHHHHHT-TT--EEE | aaaaaaaaaabaababbb |
1mld_A_13 | 1mld | A | 13 | 30 | GQPLSLLLKNSPLVSRLT | HHHHHHHHHT-TT-SEEE | aaaaaaaaaaxaababbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1d2n_A_520 | 1d2n | A | ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | V - 522 |
1g64_B_298 | 1g64 | B | MGMAGNESIUM ION | D - 327 |
1g64_B_298 | 1g64 | B | ATPADENOSINE-5'-TRIPHOSPHATE | D - 327 |
Clusters included in this Subclass |
CLUSTER: HE.5.291 |
CLUSTER: HE.6.148 |