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Information on SUBCLASS 5.36.1
Subclass Accession number: 5815
Subclass: 5.36.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 7.9 +/- 8.7
Average RMSD (Å) : 1.180 +/- 0.228

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: pXXhcXXhX
(φψ)-conformation: aabplppbb
Pattern: [AFGT][alv]xx[GLV][hk]x[AIKV]x[deqs]xxx[DGR][aikl]x[FLPTV]xx
Conservation:-0.0350.142-1.228-1.1440.5911.415-0.6200.542-1.0590.2920.788-0.9751.8711.513-1.0590.495-0.890-0.637-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1dp7_P_401dp7   P4058AASFGKLIRSVFMGLRTRRHHHHHHHHHHHSTT-EEEEaaaaaaaaaaabxvxbbbb
1opc_*_1631opc   -164181GEFAVLKALVSHPREPLS.HHHHHHHHHHHSTT--EE.aaaaaaaaaaabxvbpbx.
1qf9_A_671qf9   A7088TVKLLKNAIDANQGKNFLVHHHHHHHHHHTSTT--EEEaaaaaaaaaaabpvbbbxx
1sur_*_571sur   -5775AAVSLHLVNQIRPDIPVILHHHHHHHHHHHSTT-EEEEaaaaaaaaaaabpvxpbxb
2shp_A_4322shp   A438456FLEEVHHKQESIMDAGPVVHHHHHHHHHHHSTT---EEaaaaaaaaaaabpvpxpxx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dp7_P_401dp7   P     EDO1,2-ETHANEDIOL S - 49
1dp7_P_401dp7   P     EDO1,2-ETHANEDIOL V - 50
1dp7_P_401dp7   P     EDO1,2-ETHANEDIOL F - 51
1dp7_P_401dp7   P     EDO1,2-ETHANEDIOL M - 52
1dp7_P_401dp7   P     PEGDI(HYDROXYETHYL)ETHER M - 52
1dp7_P_401dp7   P     PEGDI(HYDROXYETHYL)ETHER G - 53
1dp7_P_401dp7   P     PEGDI(HYDROXYETHYL)ETHER L - 54
1dp7_P_401dp7   P     PEGDI(HYDROXYETHYL)ETHER R - 55
1dp7_P_401dp7   P     EDO1,2-ETHANEDIOL T - 56
1dp7_P_401dp7   P     PEGDI(HYDROXYETHYL)ETHER T - 56
1dp7_P_401dp7   P     EDO1,2-ETHANEDIOL R - 57
1dp7_P_401dp7   P     EDO1,2-ETHANEDIOL R - 58
1qf9_A_671qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE T - 70
1qf9_A_671qf9   A     ALFTETRAFLUOROALUMINATE ION D - 89
1qf9_A_671qf9   A     MGMAGNESIUM ION D - 89
1qf9_A_671qf9   A     ADPADENOSINE-5'-DIPHOSPHATE D - 89
1qf9_A_671qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE D - 89
2shp_A_4322shp   A     CATDODECANE-TRIMETHYLAMINE P - 432
2shp_A_4322shp   A     CATDODECANE-TRIMETHYLAMINE G - 434
2shp_A_4322shp   A     CATDODECANE-TRIMETHYLAMINE V - 435
2shp_A_4322shp   A     CATDODECANE-TRIMETHYLAMINE L - 436
2shp_A_4322shp   A     CATDODECANE-TRIMETHYLAMINE F - 438
2shp_A_4322shp   A     CATDODECANE-TRIMETHYLAMINE L - 439

Clusters included in this Subclass
CLUSTER: HE.5.182