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Information on SUBCLASS 3.4.1
Subclass Accession number: 582
Subclass: 3.4.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 48726 (>75 %)  48727 (>75 %)  
Number of loops: 24

Average sequence ID (%) : 11.9 +/- 14.5
Average RMSD (Å) : 0.558 +/- 0.224

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXXppXh
(φψ)-conformation: bbeaabb
Pattern: xxx[degs][adeknrst][DEHKNQRSTY]x[acfgilmvy]x
Conservation:-0.885-0.713-0.4082.1260.0360.998-0.901-0.4290.175
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bag_*_3611bag   -364372NQRGSHGVVEEETTTEEEbbxeaabbb
1bd2_D_861bd2   D92100AMEGAQKLVEESSTT-EEbbbeaabbb
1d6a_A_731d6a   A7886DPFETNKCREEETTTEEEbwbeaaxbx
1efu_B_1411efu   B145153YQHGARIGVEEETTTEEEbbxeaabbb
1eg7_A_10331eg7   A10341042ELYGKYKAKEESSSS-EEbxbeaabbb
1em2_A_3141em2   A321329QRVEDNTLIEEETTTEEEbbbeaabbb
1g0u_F_681g0u   F6876QVVDRHIGCEEETTTEEEbbbeaabbb
1gp0_A_15381gp0   A15401548AAYSEKGLVEEETTTEEEbxbeaaxbb
1gxy_A_1961gxy   A202210RTQGYNEIFEEETTTEEEbxbeaabbb
1h3f_A_4161h3f   A418426LQRGKDRFVEEETTTEEEbbbeaabbb
1hx0_A_4161hx0   A419427FGRGNRGFIEEETTTEEEbbbeaabbb
1i31_A_2871i31   A294302REVGRTKLEEEETTTEEEbxbeaabbx
1jj2_A_1261jj2   A129137LTHDRNVAVEE--SS-EEabbeaabbx
1k3b_A_571k3b   A6169TIIYNQGFEEEETTTEEEbxbeaabbb
1ky8_A_3681ky8   A368374.RLGPTYV..EEETTEE..xaeaabb.
1kyq_A_1521kyq   A154162LEIGDRLQIEEETTTEEEbbbeaabbb
1l2h_A_171l2h   A1927VMSGPYELKEESSSS-EEbpbeaabbb
1lfo_*_841lfo   -8492KMEGDNKMVEEETTTEEEbxxeaabbb
1m5q_1_1051m5q   1106114VLIGDKVRVEEETTTEEEbbbeaabbb
1nnj_A_581nnj   A6169FEIGDDFRLEEETTTEEExbbeaabbx
1ohw_A_4371ohw   A437445GGCGDKSIREEETTTEEEbbbeaabbb
1puj_A_1611puj   A161169VKVGKELELEEETTTEEExxbeaabbb
1qh5_A_21qh5   A614LPALTDNYMEEETTTEEEbwbeaaxbb
1rif_A_31rif   A614HFHDFSHVREEETTTEEEbxbMaabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d6a_A_731d6a   A     GUNGUANINE V - 73
1d6a_A_731d6a   A     GUNGUANINE M - 74
1d6a_A_731d6a   A     GUNGUANINE G - 75
1em2_A_3141em2   A     MSESELENOMETHIONINE V - 314
1k3b_A_571k3b   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 64
1k3b_A_571k3b   A     NAGN-ACETYL-D-GLUCOSAMINE N - 65
1kyq_A_1521kyq   A     MSESELENOMETHIONINE D - 158
1kyq_A_1521kyq   A     MSESELENOMETHIONINE R - 159
1lfo_*_841lfo   *     OLAOLEIC ACID M - 91
1lfo_*_841lfo   *     OLAOLEIC ACID T - 93
1lfo_*_841lfo   *     OLAOLEIC ACID F - 95
1m5q_1_1051m5q   1     MSESELENOMETHIONINE V - 105
1m5q_1_1051m5q   1     MSESELENOMETHIONINE V - 106
1m5q_1_1051m5q   1     MSESELENOMETHIONINE L - 107
1m5q_1_1051m5q   1     MSESELENOMETHIONINE I - 108
1m5q_1_1051m5q   1     MSESELENOMETHIONINE G - 109
1m5q_1_1051m5q   1     MSESELENOMETHIONINE D - 110
1m5q_1_1051m5q   1     MSESELENOMETHIONINE V - 114
1m5q_1_1051m5q   1     MSESELENOMETHIONINE S - 115
1nnj_A_581nnj   A     CRYPROPANE-1,2,3-TRIOL Y - 58
1nnj_A_581nnj   A     CRYPROPANE-1,2,3-TRIOL H - 72
1ohw_A_4371ohw   A     VIG4-AMINO HEXANOIC ACID R - 445
1puj_A_1611puj   A     MGMAGNESIUM ION D - 171
1puj_A_1611puj   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER D - 171
1qh5_A_21qh5   A     ZNZINC ION N - 12
1qh5_A_21qh5   A     GTTGLUTATHIONE N - 12
1rif_A_31rif   A     AUGOLD ION I - 3

Clusters included in this Subclass
CLUSTER: HA.3.29
CLUSTER: HA.4.14