ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 5.47.1

Subclass Accession number: 5826
Subclass: 5.47.1

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1 (>50 %)  1 (>75 %)  7 (>50 %)
GO : GO:0005506 (>50 %)  GO:0016661 (>50 %)  GO:0046914 (>50 %)  GO:0050418 (>50 %)
SCOP : 56820 (>50 %)  56821 (>50 %)  56822 (>50 %)

Number of loops: 3

Average sequence ID (%) : 20.0 +/- 16.4
Average RMSD (Å) : 0.800 +/- 0.000

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 90-135

rho (°): 270-315

Consensus Sequence:	hcXpXGXXh
(φψ)-conformation:	aabpplpbb

Pattern:	[DQ]	x	[GLT]	[IL]	[AP]	[DK]	x	[KS]	x	[G]	[AET]	[EKL]	[ALV]	x	x
Conservation:	0.842	-1.116	-0.981	0.834	0.730	0.406	-0.298	0.553	-0.642	2.610	-0.371	-0.642	-0.235	-0.710	-0.981

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1cbf_*_59	1cbf	-	59	73	QDLIAKSKPGAEVLK	HHHHTTS-TT-EEEE	aaaaaaxxpvpxbbx
1qgu_A_382	1qgu	A	386	400	DRTLPDLKEGTLLFD	HHHGGG--TT-EEEE	aaaaaabxpvxxbbb
1yat_*_57	1yat	-	60	74	DVGIPKLSVGEKARL	HHHGGG--TT-EEEE	aaaaaabbpvxbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1yat_*_57	1yat	*	FK58-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN	W - 59

Clusters included in this Subclass

CLUSTER: HE.8.40