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Information on SUBCLASS 6.2.4
Subclass Accession number: 5858
Subclass: 6.2.4 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 24.6 +/- 19.9
Average RMSD (Å) : 0.400 +/- 0.071

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: pXGhpppcIp
(φψ)-conformation: aagppaaabb
Pattern: [dsv][AGKR][fl][LMTV][EKQST][FG][AST][aim][DEK]x[ILM][AKLV][ADRS][hl][G][FGV][DEKPR][EQT][EKN][DNQ][I][dhty][ilvy]x
Conservation:-1.060-0.431-0.449-0.046-0.2870.7620.326-0.8570.790-0.6320.912-0.628-0.678-0.6993.206-0.697-0.4590.4540.4060.5981.774-1.089-0.688-0.528
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ejb_A_281ejb   A3255DALVKGAIERMASLGVEENNIIIEHHHHHHHHHHHHHTT--GGGEEEEaaaaaaaaaaaaaagxxaaabbbb
1gvh_A_3651gvh   A365388VGFMQFTAKQLVDLGVKQENIHYEHHHHHHHHHHHHHTT--GGGEEEEaaaaaaaaaaaaaagxxaaabbbb
1nqu_A_241nqu   A2851DRLVEGAIDCIVRHGGREEDITLVHHHHHHHHHHHHHTT--GGGEEEEaaaaaaaaaaaaaagxxaaabbbb
1rvv_1_241rvv   12851SKLLSGAEDALLRHGVDTNDIDVAHHHHHHHHHHHHHTT--GGGEEEEaaaaaaaaaaaaaavxxaaabbbb
8abp_*_1468abp   -149172RRRTTGSMDALKAAGFPEKQIYQVHHHHHHHHHHHHHHT--GGGEEEEaaaaaaaaaaaaaagxpaaabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gvh_A_3651gvh   A     FADFLAVIN-ADENINE DINUCLEOTIDE E - 388
8abp_*_1468abp   *     GLAALPHA D-GALACTOSE T - 147
8abp_*_1468abp   *     GLBBETA-D-GALACTOSE T - 147
8abp_*_1468abp   *     GLBBETA-D-GALACTOSE A - 148
8abp_*_1468abp   *     GLAALPHA D-GALACTOSE R - 151
8abp_*_1468abp   *     GLBBETA-D-GALACTOSE R - 151
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gvh_A_3651gvh   A AC1FAD BINDING SITE FOR CHAIN AE - 388

Clusters included in this Subclass
CLUSTER: HE.6.189
CLUSTER: HE.7.60