ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.6.1

Subclass Accession number: 5866
Subclass: 6.6.1

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 19

Average sequence ID (%) : 24.6 +/- 21.6
Average RMSD (Å) : 0.589 +/- 0.281

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 45-90

rho (°): 315-360

Consensus Sequence:	XXchXXhPph
(φψ)-conformation:	aalpabbwbb

Pattern:	[ailtv]	[agiltv]	[adekqrst]	[adegkqt]	x	[degnqr]	[afilv]	x	[agqst]	[ilmtv]	[p]	[aktv]	[filmtv]	[fiklv]	[afgiltv]
Conservation:	-0.486	-0.379	-0.519	-0.599	-0.782	0.102	0.384	-0.497	-0.437	0.490	3.324	0.231	0.094	-0.487	-0.440

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a8l_*_182	1a8l	-	184	198	WADQYNVMAVPKIVI	HHHHTT--SS-EEEE	aaaaalxaxbwbbbb
1aiu_*_63	1aiu	-	65	79	VASECEVKCMPTFQF	HHHHTT--SSSEEEE	aaaaalxabbwbbbb
1ep7_A_68	1ep7	A	70	84	VAEAAGITAMPTFHV	HHHHHT--SSSEEEE	aaaaavxabbwbbbb
1f9m_A_78	1f9m	A	80	94	LAKELGIRVVPTFKI	HHHHH--SSSSEEEE	aaaaavbabbwbbbb
1fb6_A_69	1fb6	A	71	85	IATQYNIRSIPTVLF	HHHHTT--SSSEEEE	aaaaalxabbwbbbb
1fvk_A_129	1fvk	A	141	155	AAADVQLRGVPAMFV	HHHHTT--SSSEEEE	aaaaalxabbwbbbb
1gh2_A_65	1gh2	A	67	81	TAATNNISATPTFQF	HHHHTT--SSSEEEE	aaaaalxabbwbbbb
1h75_A_37	1h75	A	42	56	ALRAQGFRQLPVVIA	HHHHTT--SS-EEEE	aaaaavxabbwbbbb
1hyu_A_160	1hyu	A	162	176	EITERNVMGVPAVFV	HHHHTT--SSSEEEE	aaaaavxabbwbbbb
1i5g_A_95	1i5g	A	101	115	LTTGFDVKSIPTLVG	HHHHTT--SSSEEEE	aaaaalxabbwbbbx
1j08_A_182	1j08	A	184	198	WADQYNVMAVPKIVI	HHHTTT--SS-EEEE	aaaaalxaxbwbbbb
1kte_*_53	1kte	-	60	74	LQQLTGARTVPRVFI	HHHHHS---S-EEEE	aaaaavbaxbwbbbb
1nw2_A_61	1nw2	A	63	77	TTSQFGIMSIPTLIL	HHHHTT--SSSEEEE	aaaaalpabbwbbbx
1o73_A_94	1o73	A	100	114	LGKTFGVESIPTLIT	HHHHHT--SSSEEEE	aaaaalxabbwbbbx
1o8x_A_94	1o8x	A	100	114	LSKHFNVESIPTLIG	HHHHTT--SSSEEEE	aaaaalxabbwbbbb
1r26_A_61	1r26	A	63	77	IVSKCRVLQLPTFII	HHHHTT--SSSEEEE	aaaaalxabbwbbbb
1r4w_A_162	1r4w	A	174	188	AACKYGAFGLPTTVA	HHHHTT--SS-EEEE	aaaaagpabbwbbbb
1uc7_A_75	1uc7	A	80	94	LLKHLNVLGLPTILF	HHHHHT--SSSEEEE	aaaaavbabbwbbbb
2trx_A_66	2trx	A	66	80	TAPKYGIRGIPTLLL	HHHHTT--SSSEEEE	aaaaavxabbwbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1i5g_A_95	1i5g	A	TS5GLUTATHIONYLSPERMIDINE	K - 108
1i5g_A_95	1i5g	A	TS5GLUTATHIONYLSPERMIDINE	S - 109
1i5g_A_95	1i5g	A	TS5GLUTATHIONYLSPERMIDINE	I - 110
1i5g_A_95	1i5g	A	TS5GLUTATHIONYLSPERMIDINE	P - 111
1r4w_A_162	1r4w	A	GSHGLUTHATHIONE	F - 181
1r4w_A_162	1r4w	A	GSHGLUTHATHIONE	G - 182
1r4w_A_162	1r4w	A	GSHGLUTHATHIONE	L - 183
1r4w_A_162	1r4w	A	GSHGLUTHATHIONE	P - 184
2trx_A_66	2trx	A	MPD2-METHYL-2,4-PENTANEDIOL	A - 67
2trx_A_66	2trx	A	MPD2-METHYL-2,4-PENTANEDIOL	P - 68
2trx_A_66	2trx	A	MPD2-METHYL-2,4-PENTANEDIOL	Y - 70
2trx_A_66	2trx	A	MPD2-METHYL-2,4-PENTANEDIOL	G - 71
2trx_A_66	2trx	A	MPD2-METHYL-2,4-PENTANEDIOL	I - 72
2trx_A_66	2trx	A	MPD2-METHYL-2,4-PENTANEDIOL	R - 73
2trx_A_66	2trx	A	MPD2-METHYL-2,4-PENTANEDIOL	G - 74
2trx_A_66	2trx	A	MPD2-METHYL-2,4-PENTANEDIOL	I - 75
2trx_A_66	2trx	A	MPD2-METHYL-2,4-PENTANEDIOL	T - 77
2trx_A_66	2trx	A	MPD2-METHYL-2,4-PENTANEDIOL	L - 78
2trx_A_66	2trx	A	MPD2-METHYL-2,4-PENTANEDIOL	L - 79

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1fvk_A_129	1fvk	A	CAATHE ACTIVE SITE.	P - 151

Clusters included in this Subclass

CLUSTER: HE.7.5