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Information on SUBCLASS 6.7.1
Subclass Accession number: 5867
Subclass: 6.7.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 18.4 +/- 22.3
Average RMSD (Å) : 0.736 +/- 0.304

Consensus geometry
d (Å): 17 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XhXhXhpphp
(φψ)-conformation: aalppaaabb
Pattern: [aegnpqs][afimv][AILY][aqs][AEKQRST][aeknrs][AFILMVY][ADGNRS][ilmvy][adeps][gip][ADES][aenqr][hlv][hkqrty][cilv][ilty]
Conservation:-1.760-1.3020.333-0.2200.181-0.7550.5360.558-0.5250.073-1.6061.8970.9430.214-0.2921.5260.199
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bu8_A_1141bu8   A133149QVLSTEMGYSPENVHLIHHHHHHH---GGGEEEEaaaaaaavxpaaabbbb
1goj_A_1801goj   A195211AVAATNMNQESSRSHSIHHHHHHTT--GGG-EEEaaaaaaalbxaaabbbb
1gpl_*_1141gpl   -133149QVLSTSLNYAPENVHIIHHHHHHH---GGGEEEEaaaaaaalxxaaabbbb
1gz3_A_2821gz3   A292308LAAQKVISKPISEHKILHHHHHHH---TTS--EEaaaaaaalbxaaaxbbb
1hpl_A_1141hpl   A133149GVLQSSFDYSPSNVHIIHHHHHHH---GGGEEEEaaaaaaalxxaaabbbb
1lpb_B_1141lpb   B133149EFLQSAFGYSPSNVHVIHHHHHHH---GGGEEEEaaaaaaavxxaaaxbbb
1nqz_A_791nqz   A85101REAQEEVALDPAAVTLLHHHHHHH---GGG-EEEaaaaaaavxxaaabxxa
1rp1_*_1141rp1   -133149SMLSANYSYSPSQVQLIHHHHHHH---GGGEEEEaaaaaaalxxaaabbbb
1st0_A_2381st0   A250266EAILQRYRMKGDHLRVYHHHHHHH---GGGEEEEaaaaaaavxxaaabbbb
1ui0_A_571ui0   A6379NRILEAAGIPREEVYITHHHHHHHT--GGGSEEEaaaaaaavbxaaabbbb
2reb_*_1012reb   -101117PIYARKLGVDIDNLLCSHHHHHHTT--GGG-EEEaaaaaaagxxaaaxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1goj_A_1801goj   A     MGMAGNESIUM ION R - 194
1goj_A_1801goj   A     MGMAGNESIUM ION S - 205
1gz3_A_2821gz3   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 283
1gz3_A_2821gz3   A     OXLOXALATE ION T - 283
1gz3_A_2821gz3   A     ATPADENOSINE-5'-TRIPHOSPHATE L - 310
1lpb_B_1141lpb   B     MUPMETHOXYUNDECYLPHOSPHINIC ACID Y - 114
1lpb_B_1141lpb   B     MUPMETHOXYUNDECYLPHOSPHINIC ACID H - 151
1nqz_A_791nqz   A     MGMAGNESIUM ION R - 85
1nqz_A_791nqz   A     MGMAGNESIUM ION E - 86
1nqz_A_791nqz   A     MGMAGNESIUM ION E - 89
1nqz_A_791nqz   A     MGMAGNESIUM ION E - 90
1st0_A_2381st0   A     GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE L - 267
1st0_A_2381st0   A     GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE H - 268
1ui0_A_571ui0   A     URAURACIL A - 58
1ui0_A_571ui0   A     URAURACIL G - 59
1ui0_A_571ui0   A     URAURACIL L - 61
1ui0_A_571ui0   A     URAURACIL R - 64
1ui0_A_571ui0   A     URAURACIL I - 65
1ui0_A_571ui0   A     URAURACIL A - 68
1ui0_A_571ui0   A     URAURACIL I - 78
1ui0_A_571ui0   A     URAURACIL T - 79
1ui0_A_571ui0   A     URAURACIL N - 80

Clusters included in this Subclass
CLUSTER: HE.5.133
CLUSTER: HE.7.9
CLUSTER: HE.8.43