Information on SUBCLASS 6.7.1 |
Subclass Accession number: 5867
Subclass: 6.7.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 11 Average sequence ID (%) : 18.4 +/- 22.3 Average RMSD (Å) : 0.736 +/- 0.304 Consensus geometry
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Consensus Sequence: | XhXhXhpphp |
(φψ)-conformation: | aalppaaabb |
Pattern: | [aegnpqs] | [afimv] | [AILY] | [aqs] | [AEKQRST] | [aeknrs] | [AFILMVY] | [ADGNRS] | [ilmvy] | [adeps] | [gip] | [ADES] | [aenqr] | [hlv] | [hkqrty] | [cilv] | [ilty] |
Conservation: | -1.760 | -1.302 | 0.333 | -0.220 | 0.181 | -0.755 | 0.536 | 0.558 | -0.525 | 0.073 | -1.606 | 1.897 | 0.943 | 0.214 | -0.292 | 1.526 | 0.199 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bu8_A_114 | 1bu8 | A | 133 | 149 | QVLSTEMGYSPENVHLI | HHHHHHH---GGGEEEE | aaaaaaavxpaaabbbb |
1goj_A_180 | 1goj | A | 195 | 211 | AVAATNMNQESSRSHSI | HHHHHHTT--GGG-EEE | aaaaaaalbxaaabbbb |
1gpl_*_114 | 1gpl | - | 133 | 149 | QVLSTSLNYAPENVHII | HHHHHHH---GGGEEEE | aaaaaaalxxaaabbbb |
1gz3_A_282 | 1gz3 | A | 292 | 308 | LAAQKVISKPISEHKIL | HHHHHHH---TTS--EE | aaaaaaalbxaaaxbbb |
1hpl_A_114 | 1hpl | A | 133 | 149 | GVLQSSFDYSPSNVHII | HHHHHHH---GGGEEEE | aaaaaaalxxaaabbbb |
1lpb_B_114 | 1lpb | B | 133 | 149 | EFLQSAFGYSPSNVHVI | HHHHHHH---GGGEEEE | aaaaaaavxxaaaxbbb |
1nqz_A_79 | 1nqz | A | 85 | 101 | REAQEEVALDPAAVTLL | HHHHHHH---GGG-EEE | aaaaaaavxxaaabxxa |
1rp1_*_114 | 1rp1 | - | 133 | 149 | SMLSANYSYSPSQVQLI | HHHHHHH---GGGEEEE | aaaaaaalxxaaabbbb |
1st0_A_238 | 1st0 | A | 250 | 266 | EAILQRYRMKGDHLRVY | HHHHHHH---GGGEEEE | aaaaaaavxxaaabbbb |
1ui0_A_57 | 1ui0 | A | 63 | 79 | NRILEAAGIPREEVYIT | HHHHHHHT--GGGSEEE | aaaaaaavbxaaabbbb |
2reb_*_101 | 2reb | - | 101 | 117 | PIYARKLGVDIDNLLCS | HHHHHHTT--GGG-EEE | aaaaaaagxxaaaxxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1goj_A_180 | 1goj | A | MGMAGNESIUM ION | R - 194 |
1goj_A_180 | 1goj | A | MGMAGNESIUM ION | S - 205 |
1gz3_A_282 | 1gz3 | A | ATPADENOSINE-5'-TRIPHOSPHATE | T - 283 |
1gz3_A_282 | 1gz3 | A | OXLOXALATE ION | T - 283 |
1gz3_A_282 | 1gz3 | A | ATPADENOSINE-5'-TRIPHOSPHATE | L - 310 |
1lpb_B_114 | 1lpb | B | MUPMETHOXYUNDECYLPHOSPHINIC ACID | Y - 114 |
1lpb_B_114 | 1lpb | B | MUPMETHOXYUNDECYLPHOSPHINIC ACID | H - 151 |
1nqz_A_79 | 1nqz | A | MGMAGNESIUM ION | R - 85 |
1nqz_A_79 | 1nqz | A | MGMAGNESIUM ION | E - 86 |
1nqz_A_79 | 1nqz | A | MGMAGNESIUM ION | E - 89 |
1nqz_A_79 | 1nqz | A | MGMAGNESIUM ION | E - 90 |
1st0_A_238 | 1st0 | A | GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE | L - 267 |
1st0_A_238 | 1st0 | A | GTG7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE | H - 268 |
1ui0_A_57 | 1ui0 | A | URAURACIL | A - 58 |
1ui0_A_57 | 1ui0 | A | URAURACIL | G - 59 |
1ui0_A_57 | 1ui0 | A | URAURACIL | L - 61 |
1ui0_A_57 | 1ui0 | A | URAURACIL | R - 64 |
1ui0_A_57 | 1ui0 | A | URAURACIL | I - 65 |
1ui0_A_57 | 1ui0 | A | URAURACIL | A - 68 |
1ui0_A_57 | 1ui0 | A | URAURACIL | I - 78 |
1ui0_A_57 | 1ui0 | A | URAURACIL | T - 79 |
1ui0_A_57 | 1ui0 | A | URAURACIL | N - 80 |
Clusters included in this Subclass |
CLUSTER: HE.5.133 |
CLUSTER: HE.7.9 |
CLUSTER: HE.8.43 |