ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.8.1

Subclass Accession number: 5869
Subclass: 6.8.1

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 12

Average sequence ID (%) : 56.5 +/- 28.7
Average RMSD (Å) : 0.258 +/- 0.100

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 45-90

rho (°): 315-360

Consensus Sequence:	pSchcTpAXX
(φψ)-conformation:	aallpaapbb

Pattern:	[aglp]	[en]	[lw]	[aimv]	[c]	[almtv]	[almv]	[efk]	[fhwy]	[et]	[s]	[gns]	[fry]	[dn]	[st]	[hqrs]	[ak]	[fitv]	[nv]
Conservation:	-1.299	0.286	1.460	-0.346	3.114	-0.756	-0.854	-0.817	-0.005	-0.131	0.718	-0.215	-0.028	0.479	0.463	-0.764	-0.169	-0.697	-0.441

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b9o_A_23	1b9o	A	24	42	PELICTMFHTSGYDTQAIV	HHHHHHHHHHHTTBTT-EE	aaaaaaaaaaavvbaaxbb
1gd6_A_22	1gd6	A	23	41	RNWVCLVEHESSRDTSKTN	HHHHHHHHHHTTTBTT-EE	aaaaaaaaaaavlbaaxbb
1ghl_A_25	1ghl	A	26	44	GNWVCAAKFESNFNTGATN	HHHHHHHHHHHTTBTT-EE	aaaaaaaaaaalvxaaxbb
1hhl_*_25	1hhl	-	26	44	GNWVCAAKFESNFNSQATN	HHHHHHHHHHHTTBTT-EE	aaaaaaaaaaalvxaaxbb
1jse_*_25	1jse	-	26	44	GNWVCAAKFESNFNTHATN	HHHHHHHHHHHTTBTT-EE	aaaaaaaaaaNlvbaapbb
1jsf_*_25	1jsf	-	26	44	ANWMCLAKWESGYNTRATN	HHHHHHHHHHHSSBTT-EE	aaaaaaaaaaavvbaaxbb
1lmq_*_25	1lmq	-	26	44	PNWVCLSKWESSYNTQATN	HHHHHHHHHHHTTBTT-EE	aaaaaaaaaaalvxaaxbb
1lsg_*_27	1lsg	-	27	45	GNWVCAAKFESNFNTQATN	HHHHHHHHHHHSSBTT-EE	aaaaaaaaaaNvlxaaxbb
1nmm_A_23	1nmm	A	24	42	LEWACVLFHTSGYDTQAVV	HHHHHHHHHHHTTBTT-EE	aaaaaaaaaaavlxaaxbb
1qqy_A_25	1qqy	A	26	44	ANWVCMAEYESNFNTQAFN	HHHHHHHHHHHTTBTT-EE	aaaaaaaaaaalvxaaxbb
2eql_*_25	2eql	-	26	44	ANWVCMAEYESNFNTRAFN	HHHHHHHHHHHSSBTT-EE	aaaaaaaaaaavvbaaxbb
3lzt_*_25	3lzt	-	26	44	GNWVCAAKFESNFNTQATN	HHHHHHHHHHHTTBTT-EE	aaaaaaaaaaalvxaapbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1jse_*_25	1jse	*	POLN-PROPANOL	L - 25
1jse_*_25	1jse	*	POLN-PROPANOL	N - 27
1lmq_*_25	1lmq	*	NAGN-ACETYL-D-GLUCOSAMINE	E - 35
1lmq_*_25	1lmq	*	NAGN-ACETYL-D-GLUCOSAMINE	N - 44
1nmm_A_23	1nmm	A	NAGN-ACETYL-D-GLUCOSAMINE	F - 31
1nmm_A_23	1nmm	A	NAGN-ACETYL-D-GLUCOSAMINE	H - 32
1nmm_A_23	1nmm	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 33
3lzt_*_25	3lzt	*	ACTACETATE ION	E - 35

Clusters included in this Subclass

CLUSTER: HE.6.27