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Information on SUBCLASS 6.9.1
Subclass Accession number: 5870
Subclass: 6.9.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 10

Average sequence ID (%) : 25.6 +/- 34.6
Average RMSD (Å) : 1.630 +/- 0.250

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XLXXpXpXXh
(φψ)-conformation: aalbbaaabb
Pattern: xxxxxxx[afmw]x[fhmqr]x[afik][flmy][aeknst]x[al][gr]x[adent]x[egn][ades][hlm]xxx
Conservation:-0.766-0.407-1.317-0.212-0.297-0.348-1.443-0.087-0.622-0.277-0.318-0.7181.4490.257-0.5042.3772.100-1.0200.478-0.0211.6060.6550.688-0.435-0.817-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aru_*_2661aru   -268292VMGQRYRAAMAKMSVLGFDRNALTD.HHHHHHHHHHHHHHTTTS-GGGSEE.aaaaaaaaaaaaaaaxvbbaaabbx.
1d4x_A_791d4x   A79104WDDMEKIWHHTFYNELRVAPEEHPVLHHHHHHHHHHHHHTTT---GGGS-EEaaaaaaaaaaaaaaaalbbaaabxbx
1k8k_A_861k8k   A86111WDLMERFMEQVIFKYLRAEPEDHYFLHHHHHHHHHHHHHTTT---GGG--EEaaaaaaaaaaaaaaaalbxaaabxbb
1llp_*_2581llp   -260284KLVDDFQFIFLALTQLGQDPNAMTD.HHHHHHHHHHHHHHTTTS-GGGSEE.aaaaaaaaaaaaaaaxvbbaaabbx.
1mn2_*_2621mn2   -264288FMAASFRAAMSKLAVLGHNRNSLID.HHHHHHHHHHHHHTTTTS-GGGSEE.aaaaaaaaaaaaaaapvbxaaabxx.
1mzj_A_2221mzj   A229254AVADVVPAAREALEVAGLTVGDLVAFHHHHHHHHHHHHHHTTT--GGG-SEEaaaaaaaaaaaaaaaavbbaaaxabb
1nm1_A_791nm1   A79104WDDMEKIWHHTFYNELRVAPEEHPVLHHHHHHHHHHHHHTTS---GGGS-EEaaaaaaaaaaaaaaaalbbaaabxbb
1qpa_A_2581qpa   A260284KLQEDFQFIFTALSTLGHDMNAMID.HHHHHHHHHHHHHHTTTS-GGGSEE.aaaaaaaaaaaaaaapvbbaaaxxx.
1qz5_A_791qz5   A79104WDDMEKIWHHTFYNELRVAPEEHPTLHHHHHHHHHHHHHTTS---GGGS-EEaaaaaaaaaaaaaaaalbxaaabpbx
1yag_A_791yag   A79104WDDMEKIWHHTFYNELRVAPEEHPVLHHHHHHHHHHHHHTTT-S-GGGS-EEaaaaaaaaaaaaaaaavbxaaabxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aru_*_2661aru   *     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 273
1aru_*_2661aru   *     CACALCIUM ION Y - 273
1aru_*_2661aru   *     HEMPROTOPORPHYRIN IX CONTAINING FE M - 277
1aru_*_2661aru   *     CACALCIUM ION M - 277
1aru_*_2661aru   *     HEMPROTOPORPHYRIN IX CONTAINING FE M - 280
1aru_*_2661aru   *     CACALCIUM ION M - 280
1llp_*_2581llp   *     NAGN-ACETYL-D-GLUCOSAMINE S - 259
1llp_*_2581llp   *     NAGN-ACETYL-D-GLUCOSAMINE K - 260
1llp_*_2581llp   *     HYDHYDROXY GROUP L - 261
1llp_*_2581llp   *     HYDHYDROXY GROUP D - 264
1llp_*_2581llp   *     HYDHYDROXY GROUP F - 265
1llp_*_2581llp   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 265
1llp_*_2581llp   *     CACALCIUM ION F - 265
1llp_*_2581llp   *     HYDHYDROXY GROUP Q - 266
1llp_*_2581llp   *     HYDHYDROXY GROUP I - 268
1llp_*_2581llp   *     HEMPROTOPORPHYRIN IX CONTAINING FE F - 269
1llp_*_2581llp   *     CACALCIUM ION F - 269
1llp_*_2581llp   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 272
1llp_*_2581llp   *     CACALCIUM ION L - 272
1mn2_*_2621mn2   *     CACALCIUM ION M - 273
1mn2_*_2621mn2   *     HEMPROTOPORPHYRIN IX CONTAINING FE M - 273
1mn2_*_2621mn2   *     CACALCIUM ION L - 276
1mn2_*_2621mn2   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 276
1mzj_A_2221mzj   A     COACOENZYME A G - 222
1mzj_A_2221mzj   A     COACOENZYME A K - 223
1mzj_A_2221mzj   A     COACOENZYME A V - 225
1mzj_A_2221mzj   A     COACOENZYME A F - 226
1qpa_A_2581qpa   A     NAGN-ACETYL-D-GLUCOSAMINE T - 259
1qpa_A_2581qpa   A     HTRBETA-HYDROXYTRYPTOPHANE K - 260
1qpa_A_2581qpa   A     HTRBETA-HYDROXYTRYPTOPHANE L - 261
1qpa_A_2581qpa   A     NAGN-ACETYL-D-GLUCOSAMINE E - 263
1qpa_A_2581qpa   A     HTRBETA-HYDROXYTRYPTOPHANE D - 264
1qpa_A_2581qpa   A     CACALCIUM ION D - 264
1qpa_A_2581qpa   A     HTRBETA-HYDROXYTRYPTOPHANE F - 265
1qpa_A_2581qpa   A     HTRBETA-HYDROXYTRYPTOPHANE F - 267
1qpa_A_2581qpa   A     HTRBETA-HYDROXYTRYPTOPHANE I - 268
1qpa_A_2581qpa   A     CACALCIUM ION I - 268

Clusters included in this Subclass
CLUSTER: HE.10.5
CLUSTER: HE.11.3
CLUSTER: HE.9.21