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Information on SUBCLASS 6.13.1
Subclass Accession number: 5877
Subclass: 6.13.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 68.1 +/- 20.8
Average RMSD (Å) : 0.229 +/- 0.138

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XhKVpPhSph
(φψ)-conformation: aalpbplpbb
Pattern: [G][FIV][AQS][ST][G][AFY][G][AS][AC][IV][KN][ATV][AGL][K][LV][EKT][P][AG][S][STV][CF][AV][TV][FW]
Conservation:1.624-0.693-0.971-0.0601.624-0.6851.624-0.331-0.2360.157-0.147-0.963-1.5101.037-0.331-1.0592.211-0.1970.450-1.0170.101-0.723-0.5690.663
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cdo_A_1761cdo   A176199GVSTGFGAAVNTAKVEPGSTCAVFHHHHHHHHHHTTT---TT-EEEEEaaaaaaaaaaaaavpbxvxbbbbx
1d1t_A_1751d1t   A175198GFSTGYGAAVKTGKVKPGSTCVVFHHHHHHHHHHTTS---TT-EEEEEaaaaaaaaaaaaalpxxvxbbbbx
1e3i_A_1791e3i   A179202GFSSGYGAAINTAKVTPGSTCAVFHHHHHHHHHHTTS---TT-EEEEEaaaaaaaaaaaaalpbpvxbbbbb
1f8f_A_1741f8f   A174197GIQTGAGACINALKVTPASSFVTWHHHHHHHHHHTTT---TT-EEEEEaaaaaaaaaaaaavpbpvxbbbbx
1ht0_A_1751ht0   A175198GFSTGYGSAVKVAKVTPGSTCAVFHHHHHHHHHHTTT---TT-EEEEEaaaaaaaaaaaaalpbpvxbbbbx
1m6h_A_1741m6h   A174197GISTGYGAAVNTAKLEPGSVCAVFHHHHHHHHHHTTT---TT-EEEEEaaaaaaaaaaaaalxxpvxxbbbx
1p0c_A_11741p0c   A11741197GFATGYGAAVNTAKVTPGSTCAVFHHHHHHHHHHTTT---TT-EEEEEaaaaaaaaaaaaavpbpvxbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cdo_A_1761cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 176
1cdo_A_1761cdo   A     ZNZINC ION G - 176
1cdo_A_1761cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 179
1cdo_A_1761cdo   A     ZNZINC ION T - 179
1cdo_A_1761cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 199
1d1t_A_1751d1t   A     ZNZINC ION G - 175
1d1t_A_1751d1t   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 175
1d1t_A_1751d1t   A     ZNZINC ION T - 178
1d1t_A_1751d1t   A     ACTACETATE ION T - 178
1d1t_A_1751d1t   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 178
1d1t_A_1751d1t   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 198
1e3i_A_1791e3i   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 179
1e3i_A_1791e3i   A     ZNZINC ION G - 179
1e3i_A_1791e3i   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 182
1e3i_A_1791e3i   A     CXFCYCLOHEXYLFORMAMIDE S - 182
1e3i_A_1791e3i   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 202
1f8f_A_1741f8f   A     ZNZINC ION G - 174
1f8f_A_1741f8f   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 174
1f8f_A_1741f8f   A     ZNZINC ION T - 177
1f8f_A_1741f8f   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE T - 177
1f8f_A_1741f8f   A     EOHETHANOL T - 177
1f8f_A_1741f8f   A     NAHNICOTINAMIDE-ADENINE-DINUCLEOTIDE W - 197
1m6h_A_1741m6h   A     PO4PHOSPHATE ION G - 174
1m6h_A_1741m6h   A     PO4PHOSPHATE ION T - 185
1p0c_A_11741p0c   A     ZNZINC ION G - 1174
1p0c_A_11741p0c   A     PO4PHOSPHATE ION G - 1174
1p0c_A_11741p0c   A     ZNZINC ION T - 1177
1p0c_A_11741p0c   A     CRYPROPANE-1,2,3-TRIOL F - 1197
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e3i_A_1791e3i   A AC1NAD BINDING SITE FOR CHAIN AS - 182

Clusters included in this Subclass
CLUSTER: HE.9.6