Information on SUBCLASS 6.26.1 |
Subclass Accession number: 5891
Subclass: 6.26.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 4 Average sequence ID (%) : 19.8 +/- 39.3 Average RMSD (Å) : 1.150 +/- 0.451 Consensus geometry
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Consensus Sequence: | phcXXpphpX |
(φψ)-conformation: | aalpapppbb |
Pattern: | x | [ilt] | [ilw] | [dky] | [ekq] | [lm] | [gkn] | x | [gkq] | [qrs] | [eks] | [ilv] | [qt] | x | [giv] | [kpt] |
Conservation: | -0.618 | -0.076 | -0.076 | -1.024 | 1.279 | 2.091 | -0.076 | -1.160 | -0.482 | 0.060 | 0.331 | 1.415 | 1.001 | -1.295 | -1.024 | -0.347 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1b24_A_58 | 1b24 | A | 58 | 73 | FLIDELNVKSKIQIVK | HHHHHTT-----EEEE | aaaaaavxaxxxbbbb |
1b8o_A_168 | 1b8o | A | 176 | 191 | STWKQMGEQRELQEGT | HHHHHTT-SS--EEEE | aaaaaalxaxxxxbex |
1e0s_A_26 | 1e0s | A | 28 | 43 | TILYKLKLGQSVTTIP | HHHHHTT----EEEEE | aaaaaavxaxbbxbbw |
1m73_E_168 | 1m73 | E | 176 | 191 | STWKQMGEQRELQEGT | HHHHHHT-SS--EEEE | aaaaaavxaxxxxbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1b24_A_58 | 1b24 | A | MSESELENOMETHIONINE | F - 58 |
1b24_A_58 | 1b24 | A | MSESELENOMETHIONINE | L - 59 |
1b24_A_58 | 1b24 | A | MSESELENOMETHIONINE | I - 60 |
1b24_A_58 | 1b24 | A | MSESELENOMETHIONINE | D - 61 |
1b24_A_58 | 1b24 | A | MSESELENOMETHIONINE | I - 69 |
1b8o_A_168 | 1b8o | A | PO4PHOSPHATE ION | Y - 192 |
1b8o_A_168 | 1b8o | A | IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL | Y - 192 |
1e0s_A_26 | 1e0s | A | GDPGUANOSINE-5'-DIPHOSPHATE | K - 26 |
1e0s_A_26 | 1e0s | A | GDPGUANOSINE-5'-DIPHOSPHATE | T - 27 |
1e0s_A_26 | 1e0s | A | GDPGUANOSINE-5'-DIPHOSPHATE | T - 28 |
1e0s_A_26 | 1e0s | A | GDPGUANOSINE-5'-DIPHOSPHATE | I - 29 |
Clusters included in this Subclass |
CLUSTER: HE.6.134 |