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Information on SUBCLASS 6.28.1
Subclass Accession number: 5893
Subclass: 6.28.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 53821 (>75 %)  53822 (>75 %)  53823 (>75 %)  
Number of loops: 4

Average sequence ID (%) : 10.8 +/- 12.0
Average RMSD (Å) : 1.075 +/- 0.574

Consensus geometry
d (Å): 17 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XppXXXPXXh
(φψ)-conformation: aalppbpabb
Pattern: [ETW][APT][AI]xxx[GKL][EKSY]x[EFKL]x[AKV][PQ][ASTV]x[GLY]x
Conservation:0.0890.5141.301-0.910-0.583-0.257-1.029-0.1910.528-0.910-0.3220.0143.0820.201-0.714-0.165-0.649
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1drk_*_2371drk   -246262ETADKVLKGEKVQAKYPHHHHHHHTT----SEEEaaaaaaaavxxbxabbx
1jx6_A_3131jx6   A321337EAIKWDLEDKPVPTVYSHHHHHHHTT----SEEEaaaaaaaalbxbxabbb
1kn3_A_1511kn3   A151167TAAFRKKYHLGAPVAGTHHHHHHHTT--S-SEEEaaaaaaaavxxpxabbb
1pfv_A_3041pfv   A305321WPAMLEGSNFRKPSNLFHHHHHHHTTB---SEEEaaaaaaaavbxbpabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1drk_*_2371drk   *     RIPRIBOSE(PYRANOSE FORM) I - 240

Clusters included in this Subclass
CLUSTER: HE.6.121