Information on SUBCLASS 6.41.1 |
Subclass Accession number: 5906
Subclass: 6.41.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 3 Average sequence ID (%) : 15.8 +/- 14.4 Average RMSD (Å) : 0.867 +/- 0.306 Consensus geometry
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Consensus Sequence: | pXXhhppXXh |
(φψ)-conformation: | aapwaappbb |
Pattern: | [AEQ] | x | x | [AI] | [SV] | [AL] | [GIL] | [NS] | [AK] | x | [GP] | [GLP] | [HQS] | [DQT] | [KPT] | x | [IL] | [IL] | [ITV] |
Conservation: | 0.043 | -0.878 | -1.223 | 0.207 | -0.215 | 0.207 | -1.338 | 1.413 | 0.353 | -0.993 | 1.378 | -1.684 | 0.158 | -0.188 | -0.303 | -0.586 | 1.627 | 1.636 | 0.388 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1g5t_A_140 | 1g5t | A | 141 | 159 | EEVISALNARPGHQTVIIT | HHHHHHHHTS-TT-EEEEE | aaaaaaaaaxwaaxxbbbb |
1j8f_A_267 | 1j8f | A | 267 | 285 | QPFASLISKAPLSTPRLLI | HHHHHHHTTS-TT--EEEE | aaaaaaaaaxwaaxxbbbb |
1m32_A_65 | 1m32 | A | 68 | 86 | AVEAVLGSALGPQDKVLIV | HHHHHHHHS--TT--EEEE | aaaaaaaaabxaaxbbxbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1g5t_A_140 | 1g5t | A | MGMAGNESIUM ION | T - 159 |
1g5t_A_140 | 1g5t | A | ATPADENOSINE-5'-TRIPHOSPHATE | T - 159 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | G - 65 |
1m32_A_65 | 1m32 | A | PLPPYRIDOXAL-5'-PHOSPHATE | G - 65 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | S - 66 |
1m32_A_65 | 1m32 | A | PLPPYRIDOXAL-5'-PHOSPHATE | S - 66 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | Y - 67 |
1m32_A_65 | 1m32 | A | PLPPYRIDOXAL-5'-PHOSPHATE | Y - 67 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | A - 68 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | V - 69 |
1m32_A_65 | 1m32 | A | PLPPYRIDOXAL-5'-PHOSPHATE | V - 69 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | E - 70 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | A - 71 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | L - 73 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | G - 74 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | L - 84 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | I - 85 |
1m32_A_65 | 1m32 | A | MSESELENOMETHIONINE | V - 86 |
Clusters included in this Subclass |
CLUSTER: HE.7.135 |