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Information on SUBCLASS 6.41.1
Subclass Accession number: 5906
Subclass: 6.41.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 15.8 +/- 14.4
Average RMSD (Å) : 0.867 +/- 0.306

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: pXXhhppXXh
(φψ)-conformation: aapwaappbb
Pattern: [AEQ]xx[AI][SV][AL][GIL][NS][AK]x[GP][GLP][HQS][DQT][KPT]x[IL][IL][ITV]
Conservation:0.043-0.878-1.2230.207-0.2150.207-1.3381.4130.353-0.9931.378-1.6840.158-0.188-0.303-0.5861.6271.6360.388
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1g5t_A_1401g5t   A141159EEVISALNARPGHQTVIITHHHHHHHHTS-TT-EEEEEaaaaaaaaaxwaaxxbbbb
1j8f_A_2671j8f   A267285QPFASLISKAPLSTPRLLIHHHHHHHTTS-TT--EEEEaaaaaaaaaxwaaxxbbbb
1m32_A_651m32   A6886AVEAVLGSALGPQDKVLIVHHHHHHHHS--TT--EEEEaaaaaaaaabxaaxbbxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1g5t_A_1401g5t   A     MGMAGNESIUM ION T - 159
1g5t_A_1401g5t   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 159
1m32_A_651m32   A     MSESELENOMETHIONINE G - 65
1m32_A_651m32   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 65
1m32_A_651m32   A     MSESELENOMETHIONINE S - 66
1m32_A_651m32   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 66
1m32_A_651m32   A     MSESELENOMETHIONINE Y - 67
1m32_A_651m32   A     PLPPYRIDOXAL-5'-PHOSPHATE Y - 67
1m32_A_651m32   A     MSESELENOMETHIONINE A - 68
1m32_A_651m32   A     MSESELENOMETHIONINE V - 69
1m32_A_651m32   A     PLPPYRIDOXAL-5'-PHOSPHATE V - 69
1m32_A_651m32   A     MSESELENOMETHIONINE E - 70
1m32_A_651m32   A     MSESELENOMETHIONINE A - 71
1m32_A_651m32   A     MSESELENOMETHIONINE L - 73
1m32_A_651m32   A     MSESELENOMETHIONINE G - 74
1m32_A_651m32   A     MSESELENOMETHIONINE L - 84
1m32_A_651m32   A     MSESELENOMETHIONINE I - 85
1m32_A_651m32   A     MSESELENOMETHIONINE V - 86

Clusters included in this Subclass
CLUSTER: HE.7.135