Information on SUBCLASS 6.42.1 |
Subclass Accession number: 5907
Subclass: 6.42.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0003779 (>75 %) GO:0005515 (>75 %) GO:0008092 (>75 %) SCOP : 55752 (>75 %) 55753 (>75 %) 55762 (>75 %) |
Number of loops: 3 Average sequence ID (%) : 50.7 +/- 4.3 Average RMSD (Å) : 0.400 +/- 0.173 Consensus geometry
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Consensus Sequence: | XXLPXppCXY |
(φψ)-conformation: | aappaabpbb |
Pattern: | [Y] | [DE] | [ADE] | [F] | [AKL] | [AES] | [CKQ] | [L] | [P] | [AE] | [DNR] | [DE] | [C] | x | [Y] | [A] | [I] | [FY] | [D] | [FY] | [DE] | [FY] | x |
Conservation: | 1.313 | -0.090 | -1.063 | 0.885 | -1.444 | -1.063 | -1.254 | 0.030 | 1.313 | -0.844 | -0.968 | -0.005 | 2.169 | -1.049 | 1.313 | 0.030 | 0.030 | 0.430 | 0.885 | 0.339 | -0.090 | 0.338 | -1.206 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1cfy_A_50 | 1cfy | A | 50 | 72 | YDAFLEKLPENDCLYAIYDFEYE | HHHHHTTS-TT--EEEEEEEEEE | aaaaaaaxpaabbbbbbbxxbbx |
1cnu_A_48 | 1cnu | A | 48 | 70 | YEDFKSQLPERDCRYAIFDYEFQ | HHHHHTTS-TTS-EEEEEEEEEE | aaaaaaaxxaabxbbbbbxxbbb |
1f7s_A_53 | 1f7s | A | 53 | 75 | YEEFAACLPADECRYAIYDFDFV | HHHHHTTS-TTS-EEEEEEEEEE | aaaaaaabxaabxbbbbbxxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1f7s_A_53 | 1f7s | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | Y - 53 |
1f7s_A_53 | 1f7s | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | F - 56 |
1f7s_A_53 | 1f7s | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | A - 57 |
1f7s_A_53 | 1f7s | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | A - 58 |
1f7s_A_53 | 1f7s | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | L - 60 |
1f7s_A_53 | 1f7s | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | P - 61 |
1f7s_A_53 | 1f7s | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | A - 62 |
1f7s_A_53 | 1f7s | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | Y - 70 |
1f7s_A_53 | 1f7s | A | LDALAURYL DIMETHYLAMINE-N-OXIDE | F - 72 |
Clusters included in this Subclass |
CLUSTER: HE.7.131 |