ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.8.2

Subclass Accession number: 591
Subclass: 3.8.2

Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 4.1 (>50 %)  4.1.2 (>50 %)
GO : GO:0016829 (>50 %)  GO:0016830 (>50 %)  GO:0016832 (>50 %)
SCOP : 53638 (>50 %)  53639 (>50 %)  53640 (>50 %)

Number of loops: 5

Average sequence ID (%) : 12.0 +/- 13.9
Average RMSD (Å) : 0.340 +/- 0.055

Consensus geometry

d (Å): 7

delta (°): 90-135

theta (°): 135-180

rho (°): 135-180

Consensus Sequence:	XpXpGXp
(φψ)-conformation:	bbaaebb

Pattern:	x	[ILV]	x	[HRSTY]	x	x	[CG]	x	x	x
Conservation:	-1.000	1.403	-0.603	-0.426	0.055	-0.593	1.710	-0.686	-0.860	-1.000

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b6a_*_455	1b6a	-	462	471	ILLRPTCKEV	EEE-SS-EEE	bbxxaaexbx
1dn0_B_205	1dn0	B	209	218	KVQHPNGNKE	EEE-TT--EE	bbbbaaexbb
1j5p_A_192	1j5p	A	196	205	RISSAIGNYE	EEEESS-EEE	bbbbaaebbb
1jy1_A_269	1jy1	A	269	276	.LLYEEGLR.	.EEESS-EE.	.bbbaaebb.
1qxy_A_229	1qxy	A	236	245	VIVTKDGPIL	EE--TT--EE	bbxbaaewbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1b6a_*_455	1b6a	*	TNP3,5,6,8-TETRAMETHYL-N-METHYL PHENANTHROLINIUM	Q - 457
1b6a_*_455	1b6a	*	COCOBALT (II) ION	Q - 457
1b6a_*_455	1b6a	*	TNP3,5,6,8-TETRAMETHYL-N-METHYL PHENANTHROLINIUM	E - 459
1b6a_*_455	1b6a	*	COCOBALT (II) ION	E - 459
1jy1_A_269	1jy1	A	MSESELENOMETHIONINE	L - 269
1jy1_A_269	1jy1	A	MSESELENOMETHIONINE	R - 276
1qxy_A_229	1qxy	A	COCOBALT (II) ION	Q - 231
1qxy_A_229	1qxy	A	M2C(2S)-2-AMINO-4-(METHYLSULFANYL)-1-PYRIDIN-2-YLBUTANE-1,1-DIOL	Q - 231
1qxy_A_229	1qxy	A	COCOBALT (II) ION	E - 233
1qxy_A_229	1qxy	A	M2C(2S)-2-AMINO-4-(METHYLSULFANYL)-1-PYRIDIN-2-YLBUTANE-1,1-DIOL	E - 233

Clusters included in this Subclass

CLUSTER: HA.3.168

CLUSTER: HA.4.148

CLUSTER: HA.5.168