Home

Classification

Query

Statistics

Contact

Links

Help

PDB code:

Information on SUBCLASS 6.63.1

Subclass Accession number: 5928 Subclass: 6.63.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation SCOP : 52820 (>50 %)  52821 (>50 %)  52827 (>50 %)

Number of loops: 3 Average sequence ID (%) : 27.8 +/- 17.0 Average RMSD (Å) : 0.900 +/- 0.346 Consensus geometry d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ofu_A_20	1ofu	A	29	40	HMAKNNVEGVEF	HHHHTT--SEEE	aaaaFbbxvbbb
1okg_A_46	1okg	A	46	57	QYAKEHVKSAIR	HHHH---TT-EE	axNabbxxvxxb
1rhs_*_43	1rhs	-	46	57	EYLERHVPGASF	HHHHSB-TT-EE	aaaabbppvxbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ofu_A_20	1ofu	A	GDPGUANOSINE-5'-DIPHOSPHATE	G - 20
1ofu_A_20	1ofu	A	GDPGUANOSINE-5'-DIPHOSPHATE	G - 21
1ofu_A_20	1ofu	A	GDPGUANOSINE-5'-DIPHOSPHATE	G - 22
1ofu_A_20	1ofu	A	GDPGUANOSINE-5'-DIPHOSPHATE	G - 23
1ofu_A_20	1ofu	A	GDPGUANOSINE-5'-DIPHOSPHATE	N - 25
1ofu_A_20	1ofu	A	GDPGUANOSINE-5'-DIPHOSPHATE	A - 26
1ofu_A_20	1ofu	A	GDPGUANOSINE-5'-DIPHOSPHATE	N - 44
1okg_A_46	1okg	A	MSESELENOMETHIONINE	E - 50
1okg_A_46	1okg	A	CACALCIUM ION	E - 50
1okg_A_46	1okg	A	MSESELENOMETHIONINE	H - 51
1okg_A_46	1okg	A	CACALCIUM ION	H - 51
1okg_A_46	1okg	A	MSESELENOMETHIONINE	V - 52
1okg_A_46	1okg	A	CACALCIUM ION	V - 52
1okg_A_46	1okg	A	MSESELENOMETHIONINE	K - 53
1okg_A_46	1okg	A	CACALCIUM ION	K - 53
1okg_A_46	1okg	A	MSESELENOMETHIONINE	I - 56

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1ofu_A_20	1ofu	A	AC1GDP BINDING SITE FOR CHAIN A	G - 20
1ofu_A_20	1ofu	A	AC1GDP BINDING SITE FOR CHAIN A	G - 21
1ofu_A_20	1ofu	A	AC1GDP BINDING SITE FOR CHAIN A	G - 22
1ofu_A_20	1ofu	A	AC1GDP BINDING SITE FOR CHAIN A	N - 25

Clusters included in this Subclass

CLUSTER: HE.5.198

For any comment or web-related incidence, send an email to the webmaster.