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Information on SUBCLASS 3.9.2
Subclass Accession number: 593
Subclass: 3.9.2 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 4

Average sequence ID (%) : 6.1 +/- 7.6
Average RMSD (Å) : 0.875 +/- 0.096

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XhXcXhp
(φψ)-conformation: abplabb
Pattern: [FGLY]xx[CFMV]x[GN]xxxx[AFGM]
Conservation:-0.124-0.012-0.6240.376-0.4572.808-0.401-1.012-0.2350.026-0.346
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1g86_A_501g86   A5464FQVCFGRRVVMEEEETTTEEEEbbbbpvabbbb
1jje_A_1221jje   A123133YWLVKNKIEVFEEEETTTEEEEbbabplabbbb
1jm6_A_13351jm6   A13381348LFSMEGFGTDAEEEETTTEEEEbbbbpvabbbb
2sqc_A_5982sqc   A598608GTGFPGDFYLGEEEETTTEEEEbbabpgabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1g86_A_501g86   A     NEQN-ETHYLMALEIMIDE H - 53
1g86_A_501g86   A     NEQN-ETHYLMALEIMIDE Q - 55
1g86_A_501g86   A     NEQN-ETHYLMALEIMIDE V - 63
1g86_A_501g86   A     NEQN-ETHYLMALEIMIDE M - 64
1g86_A_501g86   A     NEQN-ETHYLMALEIMIDE N - 65
1jm6_A_13351jm6   A     ADPADENOSINE-5'-DIPHOSPHATE L - 1338
1jm6_A_13351jm6   A     ADPADENOSINE-5'-DIPHOSPHATE S - 1340
1jm6_A_13351jm6   A     ADPADENOSINE-5'-DIPHOSPHATE T - 1346
2sqc_A_5982sqc   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE T - 599
2sqc_A_5982sqc   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE G - 600
2sqc_A_5982sqc   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE F - 601
2sqc_A_5982sqc   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE F - 605
2sqc_A_5982sqc   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE L - 607
2sqc_A_5982sqc   A     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE Y - 609

Clusters included in this Subclass
CLUSTER: HA.2.73