Information on SUBCLASS 7.2.1 |
Subclass Accession number: 5933
Subclass: 7.2.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 20.4 +/- 24.3 Average RMSD (Å) : 0.917 +/- 0.366 Consensus geometry
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Consensus Sequence: | hppXXhXpXph |
(φψ)-conformation: | aapaaaaapbb |
Pattern: | [GKLV] | [afv] | [deknq] | [ags] | [ILV] | [CIWY] | [EHKN] | [hns] | [KPR] | [EQWY] | [fly] | [aqrt] | [DST] | x | [DST] | [FIV] | [FILV] | [FLY] | [fil] |
Conservation: | -1.660 | -1.218 | -0.817 | -0.786 | 1.700 | 0.083 | 0.613 | -0.118 | 0.818 | -0.025 | 0.091 | -1.124 | 0.954 | -1.411 | 0.845 | 1.271 | 0.806 | 0.816 | -0.837 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1azs_C_265 | 1azs | C | 272 | 290 | LFKSIWNNRWLRTISVILF | HHHHHHT-TT-SS--EEEE | aaaaaaaxaaaaaxxbxxx |
1cip_A_242 | 1cip | A | 249 | 267 | LFDSICNNKWFTDTSIILF | HHHHHHT-GGGTTSEEEEE | aaaaaaaxaaaaabxbbbx |
1jj7_A_675 | 1jj7 | A | 681 | 699 | VEQLLYESPERYSRSVLLI | HHHHHHT-GGGGG-EEEEE | aaaaaaaxaaaaabbbbbb |
1nrz_A_63 | 1nrz | A | 65 | 83 | KAVAVYHNPQYQDETVFYL | HHHHHHT-GGGTT-EEEEE | aaaaaaaxwaaaaxxbbxb |
1nvm_B_59 | 1nvm | B | 59 | 77 | GVEGLIKLPEFADIDFVFD | HHHHHHHSGGGGGEEEEEE | eaaaaaaxaaaaaxabbbb |
1tad_A_238 | 1tad | A | 245 | 263 | LFNSICNHRYFATTSIVLF | HHHHHHT-GGGTTSEEEEE | aaaaaaaxaaaaaxxbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1azs_C_265 | 1azs | C | GSP5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE | N - 292 |
1cip_A_242 | 1cip | A | GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | N - 269 |
1jj7_A_675 | 1jj7 | A | MGMAGNESIUM ION | I - 699 |
1jj7_A_675 | 1jj7 | A | ADPADENOSINE-5'-DIPHOSPHATE | I - 699 |
1nvm_B_59 | 1nvm | B | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | G - 59 |
1nvm_B_59 | 1nvm | B | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | V - 60 |
1nvm_B_59 | 1nvm | B | MPD2-METHYL-2,4-PENTANEDIOL | E - 61 |
1nvm_B_59 | 1nvm | B | MPD2-METHYL-2,4-PENTANEDIOL | I - 64 |
1nvm_B_59 | 1nvm | B | NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE | D - 77 |
1tad_A_238 | 1tad | A | GDPGUANOSINE-5'-DIPHOSPHATE | N - 265 |
Clusters included in this Subclass |
CLUSTER: HE.7.95 |
CLUSTER: HE.8.50 |