ArchDB - Biological DataBase of Protein Loops

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Information on SUBCLASS 3.10.1

Subclass Accession number: 595
Subclass: 3.10.1

PSSM

Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
GO : GO:0005212 (>50 %)
SCOP : 49694 (>75 %) 49695 (>75 %) 49696 (>75 %)

Number of loops: 11

Average sequence ID (%) : 29.3 +/- 22.7
Average RMSD (Å) : 0.182 +/- 0.060

Consensus geometry

d (Å): 7

delta (°): 135-180

theta (°): 90-135

rho (°): 270-315

Consensus Sequence:	ppXchpG
(φψ)-conformation:	abpllbe

Pattern:	[AILVW]	[fimtv]	[AGLV]	[FY]	[EKQY]	x	[adeps]	[DGN]	[FY]	[AKQRS]	[G]	[deknqry]	[hmqr]	[AFIVWY]	x	[CFILV]
Conservation:	-0.455	-0.738	-0.369	1.683	0.198	-1.004	-0.787	0.345	1.625	-0.095	2.264	-0.789	-0.432	-0.403	-0.840	-0.205

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1h4a_X_131	1h4a	X	131	146	WVLYELSNYRGRQYLL	EEEEEETTTEEEEEEE	bbxbabpvvbexbbxb
1h4a_X_2	1h4a	X	3	18	ITLYEDRGFQGRHYEC	EEEEEEGGGEEEEEEE	bbbbabxvvbepbbbb
1h4a_X_41	1h4a	X	42	57	WMLYEQPNYSGLQYFL	EEEEEETTTEEEEEEE	bbxbabxlvbexbbxb
1h4a_X_89	1h4a	X	90	105	IRLYEREDYRGQMIEF	EEEEEEGGGEEEEEEE	bbbbabxlvbexbbbb
1hdf_A_15	1hdf	A	15	30	VFLYKHVNFQGDSWKV	EEEEEEGGGEEEEEEE	bbbbabxlvbepbbbb
1nps_A_3	1nps	A	3	18	ITVFYNEDFQGKQVDL	EEEEEETTTEEEEEEE	bbxbabxllbepbbxb
1nps_A_47	1nps	A	49	64	AILYQNDGFAGDQIEV	EEEEEETTTEEEEEEE	bbxbabxvlbexbbxb
1oki_A_100	1oki	A	100	115	WVAFEQSNFRGEMFIL	EEEEEEGGGEEEEEEE	bbbbabxlvbepbbxb
1oki_A_149	1oki	A	150	165	ISLFEGANFKGNTIEI	EEEEEEGGGEEEEEEE	bbbbabpvvbexbbbb
1oki_A_191	1oki	A	192	207	WVGYQYPGYRGYQYLL	EEEEEETTTEEEEEEE	bbxbabxvvbepbbxb
1oki_A_59	1oki	A	60	75	LVVFELENFQGRRAEF	EEEEEETTTEEEEEEE	bbbbabxvvbepbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1hdf_A_15	1hdf	A	MSESELENOMETHIONINE	V - 15
1hdf_A_15	1hdf	A	MSESELENOMETHIONINE	L - 17
1hdf_A_15	1hdf	A	CACALCIUM ION	Y - 18
1hdf_A_15	1hdf	A	CACALCIUM ION	K - 19
1hdf_A_15	1hdf	A	CACALCIUM ION	H - 20
1hdf_A_15	1hdf	A	CACALCIUM ION	V - 21
1hdf_A_15	1hdf	A	MSESELENOMETHIONINE	V - 30
1nps_A_3	1nps	A	CACALCIUM ION	F - 6
1nps_A_3	1nps	A	CACALCIUM ION	Y - 7
1nps_A_3	1nps	A	CACALCIUM ION	N - 8
1nps_A_3	1nps	A	CACALCIUM ION	E - 9
1nps_A_47	1nps	A	CACALCIUM ION	Y - 52
1nps_A_47	1nps	A	CACALCIUM ION	Q - 53
1nps_A_47	1nps	A	CACALCIUM ION	N - 54
1nps_A_47	1nps	A	CACALCIUM ION	D - 55
1oki_A_59	1oki	A	CSWCYSTEINE-S-DIOXIDE	F - 75
1oki_A_100	1oki	A	CSWCYSTEINE-S-DIOXIDE	W - 100
1oki_A_100	1oki	A	CSWCYSTEINE-S-DIOXIDE	N - 107
1oki_A_100	1oki	A	CSWCYSTEINE-S-DIOXIDE	F - 108

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1hdf_A_15	1hdf	A	CA1CA BINDING SITE FOR RESIDUE A1101	K - 19

Clusters included in this Subclass

CLUSTER: HA.4.32