Logo
Information on SUBCLASS 11.2.1
Subclass Accession number: 6004
Subclass: 11.2.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 68.7 +/- 19.9
Average RMSD (Å) : 0.314 +/- 0.177

Consensus geometry
d (Å): 15 delta (°): 135-180 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: RNXXRChGRhXWppL
(φψ)-conformation: aapaapaaaaaaabb
Pattern: x[dest][e][l]x[fhy][ag][at][k][hmq][a][w][r][n][as][nps][r][c][iv][g][r][il][fq][w][dgns][kns][l][nq][v][fi][d]
Conservation:-1.519-0.9640.3860.011-1.034-0.237-0.407-0.6410.386-0.9260.0112.6350.3860.761-0.540-0.9360.3861.885-0.1720.7610.386-0.356-1.0142.635-0.934-0.7890.011-0.4630.011-0.4800.761
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1jwk_A_1771jwk   A177207LDELIFATKMAWRNAPRCIGRIQWSNLQVFDHHHHHHHHHHHHHT-TT-TTGGGTT--EEEEaaaaaaaaaaaaaaxaaxaaaaaaaxbxbxx
1m7v_A_451m7v   A4575KEELEHGAKMAWRNSNRCIGRLFWNSLNVIDHHHHHHHHHHHHHT-TT-S-GGGGGG-EEEEaaaaaaaaaaaaaaxaaxaaaaaaaaxxxbx
1mjt_A_451mjt   A4575EEELIYGAKMAWRNSNRCIGRLFWDSLNVIDHHHHHHHHHHHHHT-TT-TTGGGGGG-EEEEaaaaaaaaaaaaaaxaaxaaaaaaaapbxbx
1nos_*_1771nos   -177207LDELIFATKMAWRNAPRCIGRIQWSNLQVFDHHHHHHHHHHHHHT-TT-SGGGGTT--EEEEaaaaaaaaaaaaaaxaaxaaaaaaaxbxbbx
1om4_A_3981om4   A398428DTELIYGAKHAWRNASRCVGRIQWSKLQVFDHHHHHHHHHHHHHT-TT-TTGGGTT--EEEEaaaaaaaaaaaaaaxaaxaaaaaaabbxbbx
1q2o_A_1691q2o   A169199ESELVFGAKQAWRNAPRCVGRIQWGKLQVFDHHHHHHHHHHHHHH-TT-TTGGGTT--EEEEaaaaaaaaaaaaaaxaaxaaaaaaabbxxxx
4nos_A_1834nos   A183213GDELIFATKQAWRNAPRCIGRIQWSNLQVFDHHHHHHHHHHHHHT-TT-TTGGGGG--EEEEaaaaaaaaaaaaaaxaabaaaaaaabbxbxx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1jwk_A_1771jwk   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 184
1jwk_A_1771jwk   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 187
1jwk_A_1771jwk   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 188
1jwk_A_1771jwk   A     GOLGLYCEROL W - 188
1jwk_A_1771jwk   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 191
1jwk_A_1771jwk   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 193
1jwk_A_1771jwk   A     HBI7,8-DIHYDROBIOPTERIN R - 193
1jwk_A_1771jwk   A     HEMPROTOPORPHYRIN IX CONTAINING FE C - 194
1jwk_A_1771jwk   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 195
1jwk_A_1771jwk   A     GOLGLYCEROL I - 195
1jwk_A_1771jwk   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 196
1jwk_A_1771jwk   A     GOLGLYCEROL G - 196
1jwk_A_1771jwk   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 197
1jwk_A_1771jwk   A     GOLGLYCEROL R - 197
1jwk_A_1771jwk   A     GOLGLYCEROL I - 198
1jwk_A_1771jwk   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 199
1jwk_A_1771jwk   A     GOLGLYCEROL Q - 199
1jwk_A_1771jwk   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 202
1jwk_A_1771jwk   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 203
1m7v_A_451m7v   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 52
1m7v_A_451m7v   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 55
1m7v_A_451m7v   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 56
1m7v_A_451m7v   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 59
1m7v_A_451m7v   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 61
1m7v_A_451m7v   A     THG(6S)-5,6,7,8-TETRAHYDROFOLATE R - 61
1m7v_A_451m7v   A     HEMPROTOPORPHYRIN IX CONTAINING FE C - 62
1m7v_A_451m7v   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 63
1m7v_A_451m7v   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 64
1m7v_A_451m7v   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 65
1m7v_A_451m7v   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 67
1m7v_A_451m7v   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 71
1nos_*_1771nos   *     HEMPROTOPORPHYRIN IX CONTAINING FE N - 190
1nos_*_1771nos   *     HEMPROTOPORPHYRIN IX CONTAINING FE P - 192
1nos_*_1771nos   *     IMDIMIDAZOLE C - 194
1om4_A_3981om4   A     GOLGLYCEROL Y - 403
1om4_A_3981om4   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 405
1om4_A_3981om4   A     GOLGLYCEROL H - 407
1om4_A_3981om4   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 408
1om4_A_3981om4   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 409
1om4_A_3981om4   A     GOLGLYCEROL R - 410
1om4_A_3981om4   A     GOLGLYCEROL N - 411
1om4_A_3981om4   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 412
1om4_A_3981om4   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 414
1om4_A_3981om4   A     BH4(6R,1'R,2'S)-5,6,7,8 TETRAHYDROBIOPTERIN R - 414
1om4_A_3981om4   A     HEMPROTOPORPHYRIN IX CONTAINING FE C - 415
1om4_A_3981om4   A     ACTACETATE ION V - 416
1om4_A_3981om4   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 416
1om4_A_3981om4   A     ACTACETATE ION G - 417
1om4_A_3981om4   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 417
1om4_A_3981om4   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 418
1om4_A_3981om4   A     ACTACETATE ION I - 419
1om4_A_3981om4   A     ACTACETATE ION Q - 420
1om4_A_3981om4   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 420
1om4_A_3981om4   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 424
1q2o_A_1691q2o   A     CACCACODYLATE ION A - 176
1q2o_A_1691q2o   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 176
1q2o_A_1691q2o   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 179
1q2o_A_1691q2o   A     CACCACODYLATE ION W - 180
1q2o_A_1691q2o   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 180
1q2o_A_1691q2o   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 183
1q2o_A_1691q2o   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 185
1q2o_A_1691q2o   A     BH4(6R,1'R,2'S)-5,6,7,8 TETRAHYDROBIOPTERIN R - 185
1q2o_A_1691q2o   A     DP1L-N(OMEGA)-NITROARGININE-2,4-L-DIAMINOBUTYRIC AMIDE R - 185
1q2o_A_1691q2o   A     HEMPROTOPORPHYRIN IX CONTAINING FE C - 186
1q2o_A_1691q2o   A     ACTACETATE ION V - 187
1q2o_A_1691q2o   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 187
1q2o_A_1691q2o   A     ACTACETATE ION G - 188
1q2o_A_1691q2o   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 188
1q2o_A_1691q2o   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 189
1q2o_A_1691q2o   A     ACTACETATE ION I - 190
1q2o_A_1691q2o   A     ACTACETATE ION Q - 191
1q2o_A_1691q2o   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 191
1q2o_A_1691q2o   A     CACCACODYLATE ION L - 195
1q2o_A_1691q2o   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 195
4nos_A_1834nos   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 190
4nos_A_1834nos   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 194
4nos_A_1834nos   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 197
4nos_A_1834nos   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 199
4nos_A_1834nos   A     BH4(6R,1'R,2'S)-5,6,7,8 TETRAHYDROBIOPTERIN R - 199
4nos_A_1834nos   A     HEMPROTOPORPHYRIN IX CONTAINING FE C - 200
4nos_A_1834nos   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 201
4nos_A_1834nos   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 202
4nos_A_1834nos   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 203
4nos_A_1834nos   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 205
4nos_A_1834nos   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 208
4nos_A_1834nos   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 209

Clusters included in this Subclass
CLUSTER: HE.13.2