ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 28.2.1

Subclass Accession number: 6028
Subclass: 28.2.1

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 2.7 (>75 %)  2.7.3 (>75 %)  2.7.3.2
GO : GO:0004111 (>75 %)  GO:0016301 (>75 %)  GO:0016772 (>75 %)  GO:0016775 (>75 %)
SCOP : 55930 (>75 %)  55931 (>75 %)  55935 (>75 %)

Number of loops: 3

Average sequence ID (%) : 91.3 +/- -75.8
Average RMSD (Å) : 0.300 +/- 0.100

Consensus geometry

d (Å): 25

delta (°): 0-45

theta (°): 135-180

rho (°): 45-90

Consensus Sequence:	RHGGYKPTDpHKTDLNXpNLpGGDDLDPNYVL
(φψ)-conformation:	aalgppaapbbbpbapaaapbelaappaaaba

Pattern:	[K]	[DE]	[L]	[F]	[D]	[P]	[IV]	[I]	[E]	[D]	[R]	[H]	[G]	[G]	[Y]	[K]	[P]	[T]	[D]	[EK]	[H]	[K]	[T]	[D]	[L]	[N]	[APQ]	[DE]	[N]	[L]	[KQ]	[G]	[G]	[D]	[D]	[L]	[D]	[P]	[N]	[Y]	[V]	[L]	[S]	[S]	[R]	[V]	[R]	[T]	[G]	[R]
Conservation:	-0.149	-1.076	-0.885	0.587	0.587	1.323	-1.252	-0.885	-0.149	0.587	-0.149	2.059	0.587	0.587	1.323	-0.149	1.323	-0.149	0.587	-1.620	2.059	-0.149	-0.149	0.587	-0.885	0.587	-3.011	-1.061	0.587	-0.885	-1.620	0.587	0.587	0.587	0.587	-0.885	0.587	1.323	0.587	1.323	-0.885	-0.885	-0.885	-0.885	-0.149	-0.885	-0.149	-0.149	0.587	-0.149

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1g0w_A_86	1g0w	A	86	135	KELFDPIIEDRHGGYKPTDEHKTDLNPDNLQGGDDLDPNYVLSSRVRTGR	HHHHHHHHHHHTTT--TT--------GGG----S---TTTEEEEEEEEEE	aaaaaaaaaaaalvxxaaxbbbbbaxaaaxaFvaappaaaxabbbbbbbb
1n16_A_86	1n16	A	86	135	KDLFDPVIEDRHGGYKPTDKHKTDLNQENLKGGDDLDPNYVLSSRVRTGR	HHHHHHHHHHHTTS--TT--------GGGS---S---TTTEEEEEEEEEE	aaaaaaaaaaaavgpxaaxbbxxbaxaaaxbevaappaaababbbbbbbb
1qh4_A_86	1qh4	A	86	135	KELFDPVIEDRHGGYKPTDEHKTDLNADNLQGGDDLDPNYVLSSRVRTGR	HHHHHHHHHHHTTS--TT--------GGGS-S-S---TTTEEEEEEEEEE	aaaaaaaaaaaalvxxaaxbbbxbabaaaxxevabxpaaaxabbbbbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1qh4_A_86	1qh4	A	ACTACETATE ION	R - 96

Clusters included in this Subclass