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Information on SUBCLASS 2.1.5
Subclass Accession number: 6039
Subclass: 2.1.5 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 61

Average sequence ID (%) : 8.6 +/- 12.5
Average RMSD (Å) : 0.374 +/- 0.162

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: XXXcXX
(φψ)-conformation: bblgbb
Pattern: xxxxx[degknrst]xxx
Conservation:-0.580-0.399-0.089-0.3960.1812.584-0.320-0.341-0.640
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a3k_*_1701a3k   -174181NTKLDNNW.EEEETTEE.bbbblvbx.
1a78_A_411a78   A4957RFDLHGDVNEEEETTEEExabblvxbl
1a78_A_551a78   A6269NSKEADAW.EEEETTEE.bbbbvvxx.
1a7t_A_331a7t   A4149IVINNHQAAEEEETTEEEbbbblvbbb
1ac5_*_4301ac5   -432440VKYDRNLTFEEEETTEEEbbbblvbbb
1acf_*_601acf   -6067.FDLAGVHY.EEETTEEE.bbblvbxb
1aoz_A_3591aoz   A361369KWAINDVSLEEEETTEEEbbbblvbbx
1aui_A_3191aui   A322330LKYENNVMNEEEETTEEEbbxblvbbx
1b56_*_1151b56   -119127ECVMNNVTCEEEETTEEEbbbblvxbb
1bag_*_4021bag   -403411FQVNDGKLTEEE-SSEEEbbxbllbxb
1bdo_*_1141bdo   -117125IVEAMKMMNEEEETTEEEbbbblvxbx
1beb_A_811beb   A8391KIDALNENKEEEETTEEEbbbblvbab
1bg2_*_1261bg2   -135143FEIYLDKIREEEETTEEEbbbbllbxb
1cb8_A_4451cb8   A450458ALDYDSLQAEEEETTEEExxbbllbbb
1cjx_A_2941cjx   A297305GSSVEGDKREEEETTEEEebbblgxbb
1d2o_A_6091d2o   A611619TDINGTTITEEEETTEEExbbblgxbb
1e5m_A_3951e5m   A400408SFGFGGHNVEEETTTEEEbbxpgvxbb
1ekm_A_2581ekm   A258266VMEWSNFKFEEEETTEEExbbblvxbb
1euv_A_4261euv   A427435LMNRDNIEIEEEETTEEEabbblvbbb
1exs_A_821exs   A8391KINALDENQEEEETTEEExbbblvbab
1f2k_A_10601f2k   A10601067.FELAGTRY.EEETTEEE.bbblgxbb
1f9v_A_5121f9v   A520528IEIYNENIVEEEETTEEEbbbblvbxb
1flr_H_941flr   H99107TGSYYGMDYEEEETTEEEbbbblvxbb
1goj_A_1301goj   A139147MEIYMERIREEEETTEEEbbbbllbxb
1gxq_A_1321gxq   A132139.IEMQGLSL.EEETTEEE.xbblvxbb
1gz6_A_2361gz6   A237245FEVGAGWIGEEEETTEEEbbbbUgbbb
1gzw_A_401gzw   A4856RFNAHGDANEEEETTEEEbabblvxbl
1h3i_A_1041h3i   A108115GQYKDNIR.EEEETTEE.bbbblvbp.
1hcv_*_881hcv   -93101GAGEGGTWDEEEETTEEEbbebvvbba
1hzo_A_2301hzo   A236244GSGDYGTTNEEETTTEEEbbbxllxbb
1i2s_A_2301i2s   A236244GAGSYGTRNEEETTTEEEbbbxvlxbb
1i6i_A_1381i6i   A147155MEIYCERVREEEETTEEEbbbblvxbb
1ih7_A_7071ih7   A712720VWDMEGTRYEEEETTEEExabblgxxx
1ivw_A_2371ivw   A237245HIEWEKWSLEEEETTEEExbbblvxbb
1j1t_A_1481j1t   A153161VVNNYGDVEEEEETTEEEbbbxlgbxb
1j1t_A_1591j1t   A161169EVTAFGNSFEEEETTEEEbbbblvbbb
1jgt_A_4161jgt   A416422.KRRHGRD..HEETTEE..abblvbx.
1k3b_A_671k3b   A6977EIVLNDYKWEEEETTEEEbbbblvbbb
1kas_*_3921kas   -397405SFGFGGTNGEEETTTEEEbbbpvvxbb
1l3l_A_381l3l   A4048LHIQHRHITEEEETTEEEbbbblgxbb
1ln1_A_311ln1   A3341LVETSGISIEEEETTEEENbbblvbbb
1lur_A_12771lur   A12771285CKGKKGEHYEE-GGG-EEbxxpvvxbx
1mow_A_211mow   A2735LKYKGNRSEEEETTTEEEbbbxvlbbb
1mu5_A_3431mu5   A343350.KAYQGHPF.EEETTEEE.bbblvbwb
1n1t_A_5481n1t   A553561LTMADRQGSEEEETTEEEbbbblvbbb
1n9e_A_3411n9e   A341349YFSWMDWGFEEEETTEEEbbbblvxbb
1n9e_A_4511n9e   A452460RHTGASYSAEEEETTEEEbbbblvbbb
1nkr_*_541nkr   -5461.EHHDGVSK.EEETTEEE.xxblvbbb
1nqe_A_1371nqe   A143151GWGSNSYQNEEETTTEEEbbbxgvxbb
1o12_A_521o12   A5257..GVVGAD...EETTEE...bblvxb.
1p42_A_1361p42   A137145IVEDEGRLIEEEETTEEEbbbblvxbb
1pgu_A_1791pgu   A179186.VGDDGSVV.EETTTEEE.bbxllbbb
1pvl_*_1711pvl   -171178.IMNNGWGP.EEETTEEE.xxblvbew
1slt_A_541slt   A6168NSKDAGAW.EEEETTEE.bbbblvbx.
1uas_A_2791uas   A281289VQSDNGLEVEEEETTEEEabbblvxbb
1uca_A_321uca   A3744WPQQSGTS.EEEETTEE.bxbblvbx.
1uqt_A_2101uqt   A210218SHTAWGKAFEEEETTEEEbbbblvbxb
1uuh_A_291uuh   A2935..RFAGVFH..EETTEEE..xblvxbb
2hft_*_102hft   -1422WKSTNFKTIEEEETTEEExbbblvxbb
2uag_A_3042uag   A306314VLEHNGVRWEEEETTEEEabbblvbbb
7ahl_A_1747ahl   A174181.MVNQNWGP.EEETTEEE.bxblvbew
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a3k_*_1701a3k   *     GALD-GALACTOSE V - 172
1a3k_*_1701a3k   *     NAGN-ACETYL-D-GLUCOSAMINE V - 172
1a3k_*_1701a3k   *     GALD-GALACTOSE C - 173
1a3k_*_1701a3k   *     GALD-GALACTOSE N - 174
1a3k_*_1701a3k   *     GALD-GALACTOSE W - 181
1a3k_*_1701a3k   *     NAGN-ACETYL-D-GLUCOSAMINE W - 181
1a78_A_411a78   A     TDGTHIODIGALACTOSIDE H - 45
1a78_A_411a78   A     TDGTHIODIGALACTOSIDE N - 47
1a78_A_411a78   A     TDGTHIODIGALACTOSIDE R - 49
1a78_A_411a78   A     TDGTHIODIGALACTOSIDE H - 53
1a78_A_411a78   A     TDGTHIODIGALACTOSIDE D - 55
1a78_A_411a78   A     TDGTHIODIGALACTOSIDE V - 60
1a78_A_411a78   A     TDGTHIODIGALACTOSIDE C - 61
1a78_A_411a78   A     TDGTHIODIGALACTOSIDE N - 62
1a78_A_551a78   A     TDGTHIODIGALACTOSIDE W - 69
1a7t_A_331a7t   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID V - 35
1a7t_A_331a7t   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID S - 37
1a7t_A_331a7t   A     ZNZINC ION S - 37
1ac5_*_4301ac5   *     NAGN-ACETYL-D-GLUCOSAMINE Y - 434
1ac5_*_4301ac5   *     NAGN-ACETYL-D-GLUCOSAMINE D - 435
1ac5_*_4301ac5   *     NAGN-ACETYL-D-GLUCOSAMINE R - 436
1ac5_*_4301ac5   *     NAGN-ACETYL-D-GLUCOSAMINE N - 437
1aoz_A_3591aoz   A     CUCOPPER (II) ION W - 362
1b56_*_1151b56   *     PLMPALMITIC ACID V - 118
1b56_*_1151b56   *     PLMPALMITIC ACID C - 120
1b56_*_1151b56   *     PLMPALMITIC ACID C - 127
1b56_*_1151b56   *     PLMPALMITIC ACID R - 129
1b56_*_1151b56   *     PLMPALMITIC ACID Y - 131
1bdo_*_1141bdo   *     BTNBIOTIN I - 117
1bdo_*_1141bdo   *     BTNBIOTIN E - 119
1bdo_*_1141bdo   *     BTNBIOTIN K - 122
1bdo_*_1141bdo   *     BTNBIOTIN M - 124
1bg2_*_1261bg2   *     ACTACETATE ION Y - 134
1bg2_*_1261bg2   *     ACTACETATE ION E - 136
1bg2_*_1261bg2   *     ACTACETATE ION Y - 138
1bg2_*_1261bg2   *     ACTACETATE ION R - 143
1cb8_A_4451cb8   A     MANALPHA-D-MANNOSE D - 454
1cb8_A_4451cb8   A     GCUD-GLUCURONIC ACID D - 454
1cb8_A_4451cb8   A     MANALPHA-D-MANNOSE S - 455
1cb8_A_4451cb8   A     RAMRHAMNOSE S - 455
1cb8_A_4451cb8   A     GCUD-GLUCURONIC ACID S - 455
1cb8_A_4451cb8   A     MANALPHA-D-MANNOSE L - 456
1cjx_A_2941cjx   A     FE2FE (II) ION Q - 309
1cjx_A_2941cjx   A     ACTACETATE ION Q - 309
1cjx_A_2941cjx   A     FE2FE (II) ION F - 311
1cjx_A_2941cjx   A     ACTACETATE ION F - 311
1flr_H_941flr   H     FLU2-(6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)-BENZOIC ACID S - 101
1flr_H_941flr   H     FLU2-(6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)-BENZOIC ACID Y - 102
1flr_H_941flr   H     FLU2-(6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)-BENZOIC ACID Y - 103
1flr_H_941flr   H     FLU2-(6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)-BENZOIC ACID G - 104
1flr_H_941flr   H     FLU2-(6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)-BENZOIC ACID M - 105
1flr_H_941flr   H     FLU2-(6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)-BENZOIC ACID D - 106
1gz6_A_2361gz6   A     MSESELENOMETHIONINE V - 239
1gz6_A_2361gz6   A     MSESELENOMETHIONINE A - 241
1gz6_A_2361gz6   A     MSESELENOMETHIONINE G - 242
1gz6_A_2361gz6   A     MSESELENOMETHIONINE W - 243
1gz6_A_2361gz6   A     MSESELENOMETHIONINE I - 244
1gzw_A_401gzw   A     GALD-GALACTOSE H - 44
1gzw_A_401gzw   A     GALD-GALACTOSE N - 46
1gzw_A_401gzw   A     GALD-GALACTOSE R - 48
1gzw_A_401gzw   A     BGCBETA-D-GLUCOSE R - 48
1gzw_A_401gzw   A     GALD-GALACTOSE H - 52
1gzw_A_401gzw   A     BGCBETA-D-GLUCOSE H - 52
1gzw_A_401gzw   A     BGCBETA-D-GLUCOSE D - 54
1gzw_A_401gzw   A     GALD-GALACTOSE V - 59
1gzw_A_401gzw   A     BGCBETA-D-GLUCOSE V - 59
1gzw_A_401gzw   A     GALD-GALACTOSE C - 60
1gzw_A_401gzw   A     GALD-GALACTOSE N - 61
1hzo_A_2301hzo   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID K - 234
1hzo_A_2301hzo   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID T - 235
1hzo_A_2301hzo   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID G - 236
1hzo_A_2301hzo   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID S - 237
1i2s_A_2301i2s   A     CITCITRIC ACID K - 234
1i2s_A_2301i2s   A     CITCITRIC ACID T - 235
1i2s_A_2301i2s   A     CITCITRIC ACID G - 236
1i2s_A_2301i2s   A     CITCITRIC ACID A - 237
1jgt_A_4161jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER D - 422
1l3l_A_381l3l   A     MSESELENOMETHIONINE A - 38
1l3l_A_381l3l   A     LAE3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE A - 38
1l3l_A_381l3l   A     MSESELENOMETHIONINE Y - 39
1l3l_A_381l3l   A     LAE3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE Y - 39
1l3l_A_381l3l   A     MSESELENOMETHIONINE L - 40
1l3l_A_381l3l   A     LAE3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE L - 40
1l3l_A_381l3l   A     MSESELENOMETHIONINE H - 41
1l3l_A_381l3l   A     MSESELENOMETHIONINE I - 42
1l3l_A_381l3l   A     MSESELENOMETHIONINE Q - 43
1l3l_A_381l3l   A     LAE3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE A - 49
1l3l_A_381l3l   A     LAE3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE T - 51
1ln1_A_311ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE L - 33
1ln1_A_311ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE V - 34
1ln1_A_311ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE I - 39
1ln1_A_311ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE I - 41
1mow_A_211mow   A     MGMAGNESIUM ION D - 21
1mow_A_211mow   A     MGMAGNESIUM ION G - 22
1mow_A_211mow   A     GOLGLYCEROL G - 22
1mow_A_211mow   A     GOLGLYCEROL G - 23
1mow_A_211mow   A     GOLGLYCEROL L - 24
1mow_A_211mow   A     GOLGLYCEROL Y - 25
1mow_A_211mow   A     MGMAGNESIUM ION T - 41
1mow_A_211mow   A     MGMAGNESIUM ION Q - 42
1n9e_A_4511n9e   A     TPQ5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE H - 453
1n9e_A_4511n9e   A     CACALCIUM ION H - 453
1o12_A_521o12   A     MSESELENOMETHIONINE G - 52
1o12_A_521o12   A     MSESELENOMETHIONINE V - 53
1o12_A_521o12   A     MSESELENOMETHIONINE A - 56
1o12_A_521o12   A     MSESELENOMETHIONINE D - 57
1pgu_A_1791pgu   A     MSESELENOMETHIONINE V - 179
1pgu_A_1791pgu   A     MSESELENOMETHIONINE V - 185
1pgu_A_1791pgu   A     MSESELENOMETHIONINE V - 186
1pgu_A_1791pgu   A     MSESELENOMETHIONINE F - 187
1pgu_A_1791pgu   A     MSESELENOMETHIONINE Y - 188
1pgu_A_1791pgu   A     MSESELENOMETHIONINE Q - 189
1pvl_*_1711pvl   *     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID N - 173
1pvl_*_1711pvl   *     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID N - 174
1pvl_*_1711pvl   *     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID W - 176
1pvl_*_1711pvl   *     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID Y - 179
1slt_A_541slt   A     NAGN-ACETYL-D-GLUCOSAMINE D - 54
1slt_A_541slt   A     NAGN-ACETYL-D-GLUCOSAMINE V - 59
1slt_A_541slt   A     NAGN-ACETYL-D-GLUCOSAMINE W - 68
1slt_A_541slt   A     GALD-GALACTOSE W - 68
1uas_A_2791uas   A     GOLGLYCEROL G - 286
1uas_A_2791uas   A     GOLGLYCEROL E - 288
1uca_A_321uca   A     U2PPHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER I - 33
1uca_A_321uca   A     U2PPHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER H - 34
1uca_A_321uca   A     U2PPHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER W - 37
1uuh_A_291uuh   A     MSESELENOMETHIONINE V - 33
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gzw_A_401gzw   A BGABGC BINDING SITE FOR CHAIN AR - 48

Clusters included in this Subclass
CLUSTER: HA.1.13
CLUSTER: HA.1.99
CLUSTER: HA.2.118
CLUSTER: HA.2.122
CLUSTER: HA.2.14
CLUSTER: HA.3.133
CLUSTER: HA.3.136
CLUSTER: HA.3.184
CLUSTER: HA.4.147