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Information on SUBCLASS 2.1.6
Subclass Accession number: 6040
Subclass: 2.1.6 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 53

Average sequence ID (%) : 13.5 +/- 16.6
Average RMSD (Å) : 0.375 +/- 0.147

Consensus geometry
d (Å): 3 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXXcXX
(φψ)-conformation: bblgbb
Pattern: xxxx[adegknrst]xx
Conservation:-0.585-0.102-0.293-0.3632.235-0.308-0.584
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a3k_*_1701a3k   -175181TKLDNNWEEETTEEbbblvbx
1a78_A_411a78   A5056FDLHGDVEEETTEEabblvxb
1a8d_*_3311a8d   -337343VSYNNNEEEETTEEbbbllbx
1acf_*_601acf   -6066FDLAGVHEEETTEEbbblvbx
1aui_A_3191aui   A323329KYENNVMEEETTEEbxblvbb
1b56_*_1151b56   -120126CVMNNVTEEETTEEbbblvxb
1bdo_*_1141bdo   -118124VEAMKMMEEETTEEbbblvxb
1bg2_*_1261bg2   -136142EIYLDKIEEETTEEbbbllbx
1bm8_*_51bm8   -814ARYSGVDEEETTEEbbblvbx
1bup_A_931bup   A95101VNDAGRPEEETTEEbbblvbw
1c2a_A_391c2a   A4046GPSMGDPEEETTEEbwbvvba
1cvl_*_1961cvl   -197203ETVGGSQEEETTEEbbbvvbx
1d1j_A_631d1j   A6369LTLGAKKEEETTEEbbbvvxx
1d2o_A_6091d2o   A612618DINGTTIEEETTEEbbblgxb
1f2k_A_10601f2k   A10601066FELAGTREEETTEEbbblgxb
1f9v_A_5121f9v   A521527EIYNENIEEETTEEbbblvbx
1fgy_A_2811fgy   A287293ILTDNCLEEETTEEbxbllbb
1fmb_*_631fmb   -6975IKKKGRHEEETTEEbbblUbb
1ftr_A_1331ftr   A135141DELDGRKEEETTEEbbblvxx
1g3p_*_301g3p   -3137ANYEGCLEEETTEEbxblvbx
1gzw_A_401gzw   A4955FNAHGDAEEETTEEabblvxb
1hjx_A_531hjx   A6066NISNDHIEEETTEEbbblvbx
1j1t_A_1591j1t   A162168VTAFGNSEEETTEEbbblvbb
1j20_A_3351j20   A340346KLYKGNVEEETTEEbbblgbb
1js3_A_4361js3   A438444CRLRGQFEEETTEEbbbvvxx
1k20_A_2061k20   A209215FELNGNNEEETTEEbbblvbx
1kyz_A_3471kyz   A351357CNAFNTYEEETTEExbblvbx
1l3l_A_381l3l   A4147HIQHRHIEEETTEEbbblgxb
1lid_*_1121lid   -117123CVMKGVTEEETTEEbbblgxb
1ln1_A_311ln1   A3440VETSGISEEETTEEbbblvbb
1m5s_A_1301m5s   A132138TQIAGRKEEETTEEbbblvxx
1mky_A_411mky   A4450VEWYGKTEEETTEEbbblvxb
1nep_A_521nep   A5763GIVMGIPEEETTEEbxblvbw
1nez_G_981nez   G104110VISNSVMEEETTEEbbblvbx
1nh0_A_101nh0   A1319IKIGGQLEEETTEEbbblvxx
1p4p_A_1901p4p   A195201SLVVGKTEEETTEEbbbvvbx
1pfb_A_281pfb   A3541RVKKGVVEEETTEEbbblvxx
1pne_*_631pne   -6369LTLGGQKEEETTEEbbbvvxx
1pp7_U_931pp7   U97103HDKGGWTEEETTEExxblvxb
1qcs_A_1351qcs   A138144FSFNDKLEEETTEEbxblvbx
1qmg_A_961qmg   A98104VTLSGHDEEETTEEbbblvbx
1qw2_A_231qw2   A2632IEIGGKVEEETTEEbbblvbx
1ry6_A_1371ry6   A145151EIYCGKLEEETTEEbbblvbb
1s18_A_2871s18   A294300EEDSGRVEEETTEEbbblvxb
1sty_*_221sty   -2531LMYKGQPEEETTEEbxblvbw
1uas_A_2791uas   A282288QSDNGLEEEETTEEbbblvxb
1uqt_A_2101uqt   A211217HTAWGKAEEETTEEbbblvbx
1uuz_A_441uuz   A4652LSLEGQPEEETTEEbbblvbw
2eif_A_1162eif   A120126IEAVGQYEEETTEEbbblvbb
2hft_*_102hft   -1521KSTNFKTEEETTEEbbblvxb
2uag_A_3042uag   A307313LEHNGVREEETTEEbbblvbb
4lip_D_2144lip   D218224ISVFGVTEEETTEEbbblvbb
7ahl_A_1747ahl   A174180MVNQNWGEEETTEEbxblvbe
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a3k_*_1701a3k   *     GALD-GALACTOSE V - 172
1a3k_*_1701a3k   *     NAGN-ACETYL-D-GLUCOSAMINE V - 172
1a3k_*_1701a3k   *     GALD-GALACTOSE C - 173
1a3k_*_1701a3k   *     GALD-GALACTOSE N - 174
1a3k_*_1701a3k   *     GALD-GALACTOSE W - 181
1a3k_*_1701a3k   *     NAGN-ACETYL-D-GLUCOSAMINE W - 181
1a78_A_411a78   A     TDGTHIODIGALACTOSIDE H - 45
1a78_A_411a78   A     TDGTHIODIGALACTOSIDE N - 47
1a78_A_411a78   A     TDGTHIODIGALACTOSIDE R - 49
1a78_A_411a78   A     TDGTHIODIGALACTOSIDE H - 53
1a78_A_411a78   A     TDGTHIODIGALACTOSIDE D - 55
1a78_A_411a78   A     TDGTHIODIGALACTOSIDE V - 60
1a78_A_411a78   A     TDGTHIODIGALACTOSIDE C - 61
1a78_A_411a78   A     TDGTHIODIGALACTOSIDE N - 62
1b56_*_1151b56   *     PLMPALMITIC ACID V - 118
1b56_*_1151b56   *     PLMPALMITIC ACID C - 120
1b56_*_1151b56   *     PLMPALMITIC ACID C - 127
1b56_*_1151b56   *     PLMPALMITIC ACID R - 129
1b56_*_1151b56   *     PLMPALMITIC ACID Y - 131
1bdo_*_1141bdo   *     BTNBIOTIN I - 117
1bdo_*_1141bdo   *     BTNBIOTIN E - 119
1bdo_*_1141bdo   *     BTNBIOTIN K - 122
1bdo_*_1141bdo   *     BTNBIOTIN M - 124
1bg2_*_1261bg2   *     ACTACETATE ION Y - 134
1bg2_*_1261bg2   *     ACTACETATE ION E - 136
1bg2_*_1261bg2   *     ACTACETATE ION Y - 138
1bg2_*_1261bg2   *     ACTACETATE ION R - 143
1fgy_A_2811fgy   A     4IPINOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE W - 281
1fgy_A_2811fgy   A     4IPINOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE K - 282
1fgy_A_2811fgy   A     4IPINOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE R - 284
1fgy_A_2811fgy   A     4IPINOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE Y - 295
1fmb_*_631fmb   *     HYB[2-(2-METHYL-PROPANE-2-SULFONYLMETHYL)-3-NAPHTHALEN-1-YL-PROPIONYL-VALINYL]-PHENYLALANINOL L - 81
1g3p_*_301g3p   *     TRO2-HYDROXY-TRYPTOPHAN Y - 30
1g3p_*_301g3p   *     TRO2-HYDROXY-TRYPTOPHAN A - 31
1g3p_*_301g3p   *     TRO2-HYDROXY-TRYPTOPHAN N - 32
1g3p_*_301g3p   *     TRO2-HYDROXY-TRYPTOPHAN L - 37
1gzw_A_401gzw   A     GALD-GALACTOSE H - 44
1gzw_A_401gzw   A     GALD-GALACTOSE N - 46
1gzw_A_401gzw   A     GALD-GALACTOSE R - 48
1gzw_A_401gzw   A     BGCBETA-D-GLUCOSE R - 48
1gzw_A_401gzw   A     GALD-GALACTOSE H - 52
1gzw_A_401gzw   A     BGCBETA-D-GLUCOSE H - 52
1gzw_A_401gzw   A     BGCBETA-D-GLUCOSE D - 54
1gzw_A_401gzw   A     GALD-GALACTOSE V - 59
1gzw_A_401gzw   A     BGCBETA-D-GLUCOSE V - 59
1gzw_A_401gzw   A     GALD-GALACTOSE C - 60
1gzw_A_401gzw   A     GALD-GALACTOSE N - 61
1hjx_A_531hjx   A     NAGN-ACETYL-D-GLUCOSAMINE N - 60
1hjx_A_531hjx   A     NAGN-ACETYL-D-GLUCOSAMINE I - 61
1hjx_A_531hjx   A     NAGN-ACETYL-D-GLUCOSAMINE S - 62
1hjx_A_531hjx   A     NAGN-ACETYL-D-GLUCOSAMINE N - 63
1js3_A_4361js3   A     142CARBIDOPA R - 447
1k20_A_2061k20   A     MNMANGANESE (II) ION K - 207
1k20_A_2061k20   A     GOLGLYCEROL Q - 220
1k20_A_2061k20   A     GOLGLYCEROL V - 221
1k20_A_2061k20   A     GOLGLYCEROL N - 222
1k20_A_2061k20   A     GOLGLYCEROL T - 223
1l3l_A_381l3l   A     MSESELENOMETHIONINE A - 38
1l3l_A_381l3l   A     LAE3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE A - 38
1l3l_A_381l3l   A     MSESELENOMETHIONINE Y - 39
1l3l_A_381l3l   A     LAE3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE Y - 39
1l3l_A_381l3l   A     MSESELENOMETHIONINE L - 40
1l3l_A_381l3l   A     LAE3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE L - 40
1l3l_A_381l3l   A     MSESELENOMETHIONINE H - 41
1l3l_A_381l3l   A     MSESELENOMETHIONINE I - 42
1l3l_A_381l3l   A     MSESELENOMETHIONINE Q - 43
1l3l_A_381l3l   A     LAE3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE A - 49
1l3l_A_381l3l   A     LAE3-OXO-OCTANOIC ACID (2-OXO-TETRAHYDRO-FURAN-3-YL)-AMIDE T - 51
1lid_*_1121lid   *     OLAOLEIC ACID V - 115
1lid_*_1121lid   *     OLAOLEIC ACID C - 117
1lid_*_1121lid   *     OLAOLEIC ACID R - 126
1lid_*_1121lid   *     OLAOLEIC ACID Y - 128
1ln1_A_311ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE L - 33
1ln1_A_311ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE V - 34
1ln1_A_311ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE I - 39
1ln1_A_311ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE I - 41
1mky_A_411mky   A     PO4PHOSPHATE ION D - 55
1nep_A_521nep   A     PO4PHOSPHATE ION H - 56
1nh0_A_101nh0   A     KI23-BENZYLOXYCARBONYLAMINO-2-HYDROXY-4-PHENYL-BUTYRIC ACID L - 23
1pfb_A_281pfb   A     M3LN-TRIMETHYLLYSINE W - 47
1qcs_A_1351qcs   A     MSESELENOMETHIONINE F - 138
1qcs_A_1351qcs   A     MSESELENOMETHIONINE F - 140
1qcs_A_1351qcs   A     MSESELENOMETHIONINE F - 145
1qcs_A_1351qcs   A     MSESELENOMETHIONINE L - 147
1qcs_A_1351qcs   A     MSESELENOMETHIONINE V - 149
1qw2_A_231qw2   A     MSESELENOMETHIONINE I - 23
1qw2_A_231qw2   A     MSESELENOMETHIONINE F - 35
1qw2_A_231qw2   A     MSESELENOMETHIONINE F - 36
1qw2_A_231qw2   A     MSESELENOMETHIONINE K - 37
1qw2_A_231qw2   A     MSESELENOMETHIONINE S - 38
1sty_*_221sty   *     CACALCIUM ION T - 22
1sty_*_221sty   *     PTPTHYMIDINE-3',5'-DIPHOSPHATE T - 22
1sty_*_221sty   *     CACALCIUM ION R - 35
1sty_*_221sty   *     PTPTHYMIDINE-3',5'-DIPHOSPHATE R - 35
1sty_*_221sty   *     PTPTHYMIDINE-3',5'-DIPHOSPHATE L - 36
1uas_A_2791uas   A     GOLGLYCEROL G - 286
1uas_A_2791uas   A     GOLGLYCEROL E - 288
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gzw_A_401gzw   A BGABGC BINDING SITE FOR CHAIN AR - 48
1hjx_A_531hjx   A AC1NAG BINDING SITE FOR CHAIN AN - 60
1hjx_A_531hjx   A AC1NAG BINDING SITE FOR CHAIN AI - 61
1hjx_A_531hjx   A AC1NAG BINDING SITE FOR CHAIN AS - 62

Clusters included in this Subclass
CLUSTER: HA.1.10
CLUSTER: HA.1.70
CLUSTER: HA.2.33
CLUSTER: HA.3.126
CLUSTER: HA.3.28