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PDB code:

Information on SUBCLASS 2.2.5

Subclass Accession number: 6050 Subclass: 2.2.5 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 43 Average sequence ID (%) : 10.3 +/- 14.3 Average RMSD (Å) : 0.414 +/- 0.147 Consensus geometry d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 225-270

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1acf_*_65	1acf	-	70	78	LRADDRSIY	EEESSSEEE	abbbaabbb
1bj7_*_85	1bj7	-	91	99	IHVSENMLV	EEE-SSEEE	abbbaabbb
1blx_A_79	1blx	A	85	93	VSRTDRETK	EEE-SSEEE	abbbaabbb
1bpy_A_224	1bpy	A	228	236	LSKGETKFM	EEE-SSEEE	abbbaabbb
1bup_A_7	1bup	A	9	17	IDLGSTYSC	EEE-SSEEE	bxxxaabbb
1byl_A_30	1byl	A	32	40	DFVEDDFAG	EEE-SSEEE	abbbaabbb
1c8u_A_74	1c8u	A	81	89	LRDGNSFSA	EEE-SSEEE	abbbaabbb
1ciu_*_537	1ciu	-	539	547	VSWDDTEVK	EEE-SSEEE	abbbaabbb
1ecs_A_27	1ecs	A	29	37	VFRDAGWMI	EEE-SSEEE	abbbaabbb
1f1s_A_913	1f1s	A	916	924	LENSSKQQV	EEE-SSEEE	abbbaabbb
1f1u_A_42	1f1u	A	44	52	TEEDENTIY	EEE-SSEEE	abbbaabbb
1f1x_A_42	1f1x	A	44	52	SYEDENQIY	EEE-SSEEE	abbbaabbb
1fy7_A_226	1fy7	A	228	236	IYRDDYVSF	EEE-SSEEE	abbbaabbb
1gt1_A_86	1gt1	A	92	100	VSLSRTHLV	EEE-SSEEE	abbbaabbb
1guq_A_212	1guq	A	213	221	VVETEHWLA	EEE-SSEEE	abbbaabbb
1gx3_A_209	1gx3	A	211	219	AVVTDDARY	EEE-SSEEE	bbbxaabbb
1h54_A_187	1h54	A	192	200	TDQQADRGS	EEE-SSEEE	bbbbaabbb
1hn0_A_900	1hn0	A	903	911	LRKDKDVHI	EEESSSEEE	abbbaabbb
1hr6_B_98	1hr6	B	101	109	AYTSRENTV	EEE-SSEEE	bbbbaabbb
1j1y_A_79	1j1y	A	87	95	VNLSRRTAT	EEE-SSEEE	abbbaabbb
1jce_A_5	1jce	A	8	16	IDLGTANTL	EEE-SSEEE	bbxxaabbb
1jmx_A_319	1jmx	A	325	333	LEQTPTLVR	EEE-SSEEE	abbbaabbx
1k9a_A_195	1k9a	A	201	209	IGKGEFGDV	EEE-SSEEE	abbxaabbb
1kpf_*_31	1kpf	-	32	40	IFEDDRCLA	EEE-SSEEE	abbbaabbb
1kyf_A_714	1kyf	A	716	724	LFENQLLQI	EEE-SSEEE	abbbaabbb
1m93_B_278	1m93	B	284	292	IDVNEEYTE	EEE-SSEEE	bbbbaabbb
1mbm_A_100	1mbm	A	104	112	GLLSGEVCL	EEE-SS-EE	bxbbaabbb
1nbw_A_3	1nbw	A	7	15	IDIGNATTE	EEE-SSEEE	bbxxaabbb
1obd_A_14	1obd	A	15	23	VARGKVRDI	EEE-SSEEE	abbxaabbb
1ooy_A_429	1ooy	A	429	437	RIITEKAVF	EEE-SSEEE	bbbbaabbb
1ou8_A_60	1ou8	A	62	70	LQLTNDFIQ	EEE-SSEEE	xbbbaabbb
1ox8_A_61	1ox8	A	63	71	LELANDEVR	EEE-SSEEE	xbxxaabxb
1pam_A_541	1pam	A	542	550	VAWEDTQIQ	EEE-SSEEE	abbbaabbb
1prz_A_86	1prz	A	87	95	VYEDEDIIV	EEE-SSEEE	abbbaabbb
1q4t_A_108	1q4t	A	116	124	IHAGSTTWF	EEE-SSEEE	abbxaabbb
1q4t_A_37	1q4t	A	39	47	DEMTPERAT	EEE-SSEEE	axbbaabbb
1qho_A_409	1qho	A	413	421	RWINNDVYI	EEE-SSEEE	abbbaabbb
1qho_A_538	1qho	A	539	547	KSWTSNRIE	EEE-SSEEE	abbbaabbb
1s16_A_1233	1s16	A	1241	1249	NFAGDTEAV	EEE-SSEEE	bbbbaabbb
1sc0_A_99	1sc0	A	105	113	INLGRNIQV	EEE-SSEEE	abbxaabbb
1vh9_A_97	1vh9	A	105	113	LHLGRQNQS	EEE-SSEEE	abbbaabbb
1ypr_A_65	1ypr	A	70	78	LRADDRSIY	EEE-SSEEE	abbbaabbb
4rhn_*_31	4rhn	-	32	40	IFEDDQCLA	EEE-SSEEE	abbbaabbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1blx_A_79	1blx	A	CACALCIUM ION	L - 79
1blx_A_79	1blx	A	CACALCIUM ION	F - 80
1bpy_A_224	1bpy	A	DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE	K - 234
1bpy_A_224	1bpy	A	DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE	M - 236
1bup_A_7	1bup	A	MGMAGNESIUM ION	D - 10
1bup_A_7	1bup	A	ADPADENOSINE-5'-DIPHOSPHATE	D - 10
1bup_A_7	1bup	A	PIHYDROGENPHOSPHATE ION	D - 10
1bup_A_7	1bup	A	ADPADENOSINE-5'-DIPHOSPHATE	L - 11
1bup_A_7	1bup	A	PIHYDROGENPHOSPHATE ION	L - 11
1bup_A_7	1bup	A	MGMAGNESIUM ION	G - 12
1bup_A_7	1bup	A	ADPADENOSINE-5'-DIPHOSPHATE	G - 12
1bup_A_7	1bup	A	PIHYDROGENPHOSPHATE ION	G - 12
1bup_A_7	1bup	A	MGMAGNESIUM ION	S - 13
1bup_A_7	1bup	A	ADPADENOSINE-5'-DIPHOSPHATE	S - 13
1bup_A_7	1bup	A	PIHYDROGENPHOSPHATE ION	S - 13
1bup_A_7	1bup	A	ADPADENOSINE-5'-DIPHOSPHATE	T - 14
1bup_A_7	1bup	A	PIHYDROGENPHOSPHATE ION	T - 14
1bup_A_7	1bup	A	MGMAGNESIUM ION	Y - 15
1bup_A_7	1bup	A	ADPADENOSINE-5'-DIPHOSPHATE	Y - 15
1bup_A_7	1bup	A	PIHYDROGENPHOSPHATE ION	Y - 15
1bup_A_7	1bup	A	ADPADENOSINE-5'-DIPHOSPHATE	S - 16
1ecs_A_27	1ecs	A	PG4TETRAETHYLENE GLYCOL	V - 29
1ecs_A_27	1ecs	A	PG4TETRAETHYLENE GLYCOL	F - 30
1ecs_A_27	1ecs	A	PG4TETRAETHYLENE GLYCOL	W - 35
1ecs_A_27	1ecs	A	PG4TETRAETHYLENE GLYCOL	I - 37
1ecs_A_27	1ecs	A	PG4TETRAETHYLENE GLYCOL	Q - 39
1gt1_A_86	1gt1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	N - 87
1gt1_A_86	1gt1	A	ANCANTHRACEN-1-YLAMINE	N - 87
1gt1_A_86	1gt1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	F - 89
1gt1_A_86	1gt1	A	ANCANTHRACEN-1-YLAMINE	F - 89
1gt1_A_86	1gt1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	A - 101
1gt1_A_86	1gt1	A	ANCANTHRACEN-1-YLAMINE	A - 101
1gt1_A_86	1gt1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	H - 102
1gt1_A_86	1gt1	A	ANCANTHRACEN-1-YLAMINE	H - 102
1gt1_A_86	1gt1	A	PRZ2-ISOBUTYL-3-METHOXYPYRAZINE	N - 103
1gt1_A_86	1gt1	A	ANCANTHRACEN-1-YLAMINE	N - 103
1jce_A_5	1jce	A	MSESELENOMETHIONINE	L - 10
1jce_A_5	1jce	A	MSESELENOMETHIONINE	G - 11
1jce_A_5	1jce	A	MSESELENOMETHIONINE	T - 12
1jce_A_5	1jce	A	MSESELENOMETHIONINE	A - 13
1jce_A_5	1jce	A	MSESELENOMETHIONINE	T - 15
1jce_A_5	1jce	A	MSESELENOMETHIONINE	F - 18
1kpf_*_31	1kpf	*	AMPADENOSINE MONOPHOSPHATE	F - 41
1kpf_*_31	1kpf	*	AMPADENOSINE MONOPHOSPHATE	H - 42
1obd_A_14	1obd	A	ATPADENOSINE-5'-TRIPHOSPHATE	A - 16
1obd_A_14	1obd	A	ATPADENOSINE-5'-TRIPHOSPHATE	R - 17
1obd_A_14	1obd	A	ATPADENOSINE-5'-TRIPHOSPHATE	G - 18
1obd_A_14	1obd	A	ATPADENOSINE-5'-TRIPHOSPHATE	K - 19
1obd_A_14	1obd	A	ATPADENOSINE-5'-TRIPHOSPHATE	V - 20
1obd_A_14	1obd	A	ATPADENOSINE-5'-TRIPHOSPHATE	R - 21
1obd_A_14	1obd	A	MGMAGNESIUM ION	R - 21
1obd_A_14	1obd	A	ATPADENOSINE-5'-TRIPHOSPHATE	D - 22
1obd_A_14	1obd	A	ATPADENOSINE-5'-TRIPHOSPHATE	I - 23
1ou8_A_60	1ou8	A	MGMAGNESIUM ION	G - 60
1ou8_A_60	1ou8	A	MGMAGNESIUM ION	N - 61
1prz_A_86	1prz	A	MSESELENOMETHIONINE	Y - 88
1prz_A_86	1prz	A	MSESELENOMETHIONINE	D - 90
1prz_A_86	1prz	A	MSESELENOMETHIONINE	I - 93
1prz_A_86	1prz	A	MSESELENOMETHIONINE	I - 94
1prz_A_86	1prz	A	MSESELENOMETHIONINE	V - 95
1prz_A_86	1prz	A	MSESELENOMETHIONINE	I - 96
1qho_A_409	1qho	A	MALMALTOSE	Q - 412
1qho_A_409	1qho	A	MALMALTOSE	R - 413
1qho_A_409	1qho	A	MALMALTOSE	W - 414
1qho_A_409	1qho	A	MALMALTOSE	I - 415
1qho_A_409	1qho	A	MALMALTOSE	N - 416
1sc0_A_99	1sc0	A	MSESELENOMETHIONINE	T - 99
4rhn_*_31	4rhn	*	RIBRIBOSE	F - 41

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gt1_A_86	1gt1	A	PRZPRZ BINDING SITE FOR CHAIN A	F - 89
1gt1_A_86	1gt1	A	PRZPRZ BINDING SITE FOR CHAIN A	A - 101
1gt1_A_86	1gt1	A	PRZPRZ BINDING SITE FOR CHAIN A	N - 103
1obd_A_14	1obd	A	AC2ATP BINDING SITE FOR CHAIN A	G - 18
1obd_A_14	1obd	A	AC2ATP BINDING SITE FOR CHAIN A	K - 19
1obd_A_14	1obd	A	AC2ATP BINDING SITE FOR CHAIN A	R - 21

Clusters included in this Subclass

CLUSTER: HA.2.17

CLUSTER: HA.3.20

CLUSTER: HA.4.18

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